Evidence map›Paper›PMID 37195415›Full record

ArticleThe Journal of heredity2023

Reference genome for the American rubyspot damselfly, Hetaerina americana.

Gregory F Grether, Joscha Beninde, Eric Beraut, Noravit Chumchim, Merly Escalona, Zachary G MacDonald, Courtney Miller, Ruta Sahasrabudhe, Andrew M Shedlock, Erin Toffelmier and 1 more

Abstract read
In one paragraph

Article in The Journal of heredity, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Gregory F GretherDepartment of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA 90095-1606, United States.ORCID 0000-0003-3441-0537
Joscha BenindeLa Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California Los Angeles, Los Angeles, CA 90095-7239, United States.ORCID 0000-0002-1677-1809
Eric BerautDepartment of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA 95064, United States.ORCID 0000-0002-4443-6282
Noravit ChumchimDNA Technologies and Expression Analysis Core Laboratory, University of California Davis, Davis, CA 95616, United States.ORCID 0000-0003-1139-9427
Merly EscalonaDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, United States.ORCID 0000-0003-0213-4777
Zachary G MacDonaldLa Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California Los Angeles, Los Angeles, CA 90095-7239, United States.ORCID 0000-0002-7966-5712
Courtney MillerDepartment of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA 90095-1606, United States.ORCID 0000-0002-4347-6629
Ruta SahasrabudheDNA Technologies and Expression Analysis Core Laboratory, University of California Davis, Davis, CA 95616, United States.ORCID 0000-0002-3285-6845
Andrew M ShedlockDepartment of Biology, College of Charleston, Charleston, SC 29424, United States.ORCID 0000-0001-9576-8511
Erin ToffelmierDepartment of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA 90095-1606, United States.ORCID 0000-0001-6028-8497
H Bradley ShafferDepartment of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA 90095-1606, United States.

Funding

Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
Acquisition of Covaris E220 and Sciclone G3 systems for high throughput sequencinS10OD010786 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI COMAI, LUCA · 2012 to 2012
$311k
NIH HHS S10 OD010786NIH HHS S10 OD018174
6 · The paper itself

Abstract

Damselflies and dragonflies (Order: Odonata) play important roles in both aquatic and terrestrial food webs and can serve as sentinels of ecosystem health and predictors of population trends in other taxa. The habitat requirements and limited dispersal of lotic damselflies make them especially sensitive to habitat loss and fragmentation. As such, landscape genomic studies of these taxa can help focus conservation efforts on watersheds with high levels of genetic diversity, local adaptation, and even cryptic endemism. Here, as part of the California Conservation Genomics Project (CCGP), we report the first reference genome for the American rubyspot damselfly, Hetaerina americana, a species associated with springs, streams and rivers throughout California. Following the CCGP assembly pipeline, we produced two de novo genome assemblies. The primary assembly includes 1,630,044,487 base pairs, with a contig N50 of 5.4 Mb, a scaffold N50 of 86.2 Mb, and a BUSCO completeness score of 97.6%. This is the seventh Odonata genome to be made publicly available and the first for the subfamily Hetaerininae. This reference genome fills an important phylogenetic gap in our understanding of Odonata genome evolution, and provides a genomic resource for a host of interesting ecological, evolutionary, and conservation questions for which the rubyspot damselfly genus Hetaerina is an important model system.

Indexed as

OdonataAcclimatizationAnimalsEcosystemGenomicsPhylogenyAquatic insectCalifornia Conservation Genomics ProjectCalopterygidaeOdonataZygoptera

Identifiers

PMID37195415
PMCPMC10287145

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.