Evidence map›Paper›PMID 37194692›Full record

ArticleNucleic acids research2023

Knockout of protein phosphatase 1 in Leishmania major reveals its role during RNA polymerase II transcription termination.

Rudo Kieft, Yang Zhang, Haidong Yan, Robert J Schmitz, Robert Sabatini

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Rudo KieftDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA30602, USA.ORCID 0000-0002-6494-1884
Yang ZhangDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA30602, USA.
Haidong YanDepartment of Genetics, University of Georgia, Athens, GA30602, USA.ORCID 0000-0002-9903-2672
Robert J SchmitzDepartment of Genetics, University of Georgia, Athens, GA30602, USA.
Robert SabatiniDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA30602, USA.
University of Georgia · US

Funding

Regulation of RNA polymerase II transcription in trypanosomatidsR01AI109108 · NIAID · UNIVERSITY OF GEORGIA · PI SABATINI, ROBERT S · 2014 to 2022
$3.7M
NIAID NIH HHS R01 AI109108
6 · The paper itself

Abstract

The genomes of kinetoplastids are organized into polycistronic transcription units that are flanked by a modified DNA base (base J, beta-D-glucosyl-hydroxymethyluracil). Previous work established a role of base J in promoting RNA polymerase II (Pol II) termination in Leishmania major and Trypanosoma brucei. We recently identified a PJW/PP1 complex in Leishmania containing a J-binding protein (JBP3), PP1 phosphatase 1, PP1 interactive-regulatory protein (PNUTS) and Wdr82. Analyses suggested the complex regulates transcription termination by recruitment to termination sites via JBP3-base J interactions and dephosphorylation of proteins, including Pol II, by PP1. However, we never addressed the role of PP1, the sole catalytic component, in Pol II transcription termination. We now demonstrate that deletion of the PP1 component of the PJW/PP1 complex in L. major, PP1-8e, leads to readthrough transcription at the 3'-end of polycistronic gene arrays. We show PP1-8e has in vitro phosphatase activity that is lost upon mutation of a key catalytic residue and associates with PNUTS via the conserved RVxF motif. Additionally, purified PJW complex with associated PP1-8e, but not complex lacking PP1-8e, led to dephosphorylation of Pol II, suggesting a direct role of PNUTS/PP1 holoenzymes in regulating transcription termination via dephosphorylating Pol II in the nucleus.

Indexed as

Leishmania majorProtein Phosphatase 1RNA Polymerase IITranscription Termination, GeneticTranscription FactorsTranscription, GeneticProtein Phosphatase 1RNA Polymerase IITranscription Factors

Identifiers

PMID37194692
PMCPMC10325913
OpenAlexW4376871991

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.