Evidence map›Paper›PMID 37193981›Full record

ArticleBMC cancer2023

ACSL4 serves as a novel prognostic biomarker correlated with immune infiltration in Cholangiocarcinoma.

Shuochen Liu, Shilong Fan, Yirui Wang, Ruixiang Chen, Ziyi Wang, Yaodong Zhang, Wangjie Jiang, Yananlan Chen, Xiao Xu, Yue Yu and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 20 citations in OpenAlex.

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  15. Long-chain acyl-CoA synthetase 4-mediated mitochondrial fatty acid metabolism and dendritic cell antigen presentation.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Shuochen Liu *Hepatobiliary Center, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.
Shilong Fan *Hepatobiliary Center, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.
Yirui Wang *Hepatobiliary Center, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.
Ruixiang Chen *Hepatobiliary Center, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.
Ziyi WangHepatobiliary Center, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.
Yaodong ZhangHepatobiliary Center, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.
Wangjie JiangHepatobiliary Center, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.
Yananlan ChenHepatobiliary Center, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.
Xiao XuHepatobiliary Center, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.
Yue YuHepatobiliary Center, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China. yuyue@njmu.edu.cn.
Changxian LiHepatobiliary Center, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China. doclicx20@163.com.
Xiangcheng LiHepatobiliary Center, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China. drxcli@njmu.edu.cn.
Nanjing Medical University · CNJiangsu Province Hospital · CNChinese Academy of Medical Sciences & Peking Union Medical College · CNZhongshan Hospital · CN

Funding

Key Research and Development Program of Jiangsu Province BE2016789National Natural Science Foundation of China 82270607National Natural Science Foundation of China 82273066
6 · The paper itself

Abstract

backgroundCholangiocarcinoma (CHOL) is the second most common primary hepatic malignant tumor, following hepatocellular carcinoma (HCC). CHOL is highly aggressive and heterogeneous resulting in poor prognosis. The diagnosis and prognosis of CHOL has not improved in the past decade. Acyl-CoA synthetase long-chain family member 4 (ACSL4) is reported to be associated with tumors, however, its role in CHOL has not been revealed. This study is mainly for exploring the prognostic values and potential function of ACSL4 in CHOL.

methodsWe investigated the expression level and prognostic value of ACSL4 in CHOL based on The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) datasets. TIMER2.0, TISIDB and CIBERSORT databases were utilized to assess the associations between ACSL4 and immune infiltration cells in CHOL. Single-cell sequencing data from GSE138709 was analyzed to study the expression of ACSL4 in different types of cells. ACSL4 co-expressed genes were analyzed by Linkedomics. Additionally, Western Blot, qPCR, EdU assay, CCK8 assay, transwell assay and wound healing assay were performed to further confirm the roles of ACSL4 in the pathogenesis of CHOL.

resultsWe found that the level of ACSL4 was higher in CHOL and it was correlated with the diagnosis and prognosis of CHOL patients. Then, we observed that the infiltration level of immune cells was related to the level of ACSL4 in CHOL. Moreover, ACSL4 and its co-expressed genes were mainly enriched in metabolism-related pathway and ACSL4 is also a key pro-ferroptosis gene in CHOL. Finally, knockdown of ACSL4 could reverse the tumor-promoting effect of ACSL4 in CHOL.

conclusionsThe current findings demonstrated ACSL4 may as a novel biomarker for CHOL patients, which might regulate immune microenvironment and metabolism resulting in poor prognosis.

Indexed as

Bile Duct NeoplasmsCarcinoma, HepatocellularCholangiocarcinomaLiver NeoplasmsBile Ducts, IntrahepaticHumansPrognosisTumor MicroenvironmentACSL4CholangiocarcinomaGEOImmune infiltrationPrognosisSingle-cell sequenceTCGA

Identifiers

PMID37193981
PMCPMC10186676
OpenAlexW4376645299

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.