Evidence map›Paper›PMID 37191793›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

Combination of Tissue Microarray Profiling and Multiplexed IHC Approaches to Investigate Transport Mechanism of Nucleoside Analog Drug Resistance.

Debasis Nayak, Brenna Weadick, Rajgopal Govindarajan

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Debasis NayakDivision of Pharmaceutics and Pharmacology, The Ohio State University College of Pharmacy, Columbus, OH, USA.
Brenna WeadickDivision of Pharmaceutics and Pharmacology, The Ohio State University College of Pharmacy, Columbus, OH, USA.
Rajgopal GovindarajanDivision of Pharmaceutics and Pharmacology, The Ohio State University College of Pharmacy, Columbus, OH, USA. govindarajan.21@osu.edu.

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Tasleem J Padamsee · 1985 to 2026
$132.3M
Anti-HIV NRTIs and the lysosomal toxicityR01GM143217 · NIGMS · OHIO STATE UNIVERSITY · PI GOVINDARAJAN, RAJGOPAL · 2021 to 2024
$1.3M
Evaluation of the antitumorigenic roles of miR-122 in pancreatic cancerR03CA262490 · NCI · OHIO STATE UNIVERSITY · PI GOVINDARAJAN, RAJGOPAL · 2022 to 2023
$158k
NCI NIH HHS P30 CA016058NCI NIH HHS R03 CA262490NIGMS NIH HHS R01 GM143217
6 · The paper itself

Abstract

Nucleoside analogs (NAs) are an established class of anticancer agents being used clinically for the treatment of diverse cancers, either as monotherapy or in combination with other established anticancer or pharmacological agents. To date, nearly a dozen anticancer NAs are approved by the FDA, and several novel NAs are being tested in preclinical and clinical trials for future applications. However, improper delivery of NAs into tumor cells because of alterations in expression of one or more drug carrier proteins (e.g., solute carrier (SLC) transporters) within tumor cells or cells surrounding the tumor microenvironment stands as one of the primary reasons for therapeutic drug resistance. The combination of tissue microarray (TMA) and multiplexed immunohistochemistry (IHC) is an advanced, high-throughput approach over conventional IHC that enables researchers to effectively investigate alterations to numerous such chemosensitivity determinants simultaneously in hundreds of tumor tissues derived from patients. In this chapter, taking an example of a TMA from pancreatic cancer patients treated with gemcitabine (a NA chemotherapeutic agent), we describe the step-by-step procedure of performing multiplexed IHC, imaging of TMA slides, and quantification of expression of some relevant markers in these tissue sections as optimized in our laboratory and discuss considerations while designing and carrying out this experiment.

Indexed as

Antineoplastic AgentsBiological TransportDrug Resistance, NeoplasmGemcitabineImmunohistochemistryNucleosidesTissue Array AnalysisAntibodiesEquilibrative Nucleoside Transporter 1FluorescenceHumansPancreatic NeoplasmsParaffin EmbeddingTissue FixationAntibodiesAntineoplastic AgentsEquilibrative Nucleoside Transporter 1GemcitabineNucleosidesSLC29A1 protein, humanEquilibrative nucleoside transporter (ENT), Concentrative nucleoside transporters (CNT)Heat-induced antigen retrieval (HIER)Immunohistochemistry, Multiplexing, Solute carrier (SLC) transportersNucleoside analogsNucleoside transporter (NT)Pancreatic cancerTissue microarray

Identifiers

PMID37191793
PMCPMC10311792

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.