Evidence map›Paper›PMID 37189414›Full record

ArticleBiomolecules2023

Enhancing the Conformational Stability of the cl-Par-4 Tumor Suppressor via Site-Directed Mutagenesis.

Samjhana Pandey, Krishna K Raut, Andrea M Clark, Antoine Baudin, Lamya Djemri, David S Libich, Komala Ponniah, Steven M Pascal

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Biomolecules, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Samjhana PandeyBiomedical Sciences Program, Old Dominion University, Norfolk, VA 23529, USA.
Krishna K RautDepartment of Chemistry and Biochemistry, Old Dominion University, Norfolk, VA 23529, USA.
Andrea M ClarkDepartment of Chemistry and Biochemistry, Old Dominion University, Norfolk, VA 23529, USA.
Antoine BaudinGreehey Children's Cancer Research Institute, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA.ORCID 0000-0002-1390-1196
Lamya DjemriDepartment of Chemistry and Biochemistry, Old Dominion University, Norfolk, VA 23529, USA.
David S LibichGreehey Children's Cancer Research Institute, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA.ORCID 0000-0001-6492-2803
Komala PonniahDepartment of Chemistry and Biochemistry, Old Dominion University, Norfolk, VA 23529, USA.
Steven M PascalDepartment of Chemistry and Biochemistry, Old Dominion University, Norfolk, VA 23529, USA.
The University of Texas Health Science Center at San Antonio · USOld Dominion University · US

Funding

Synthesis of enterovirus positive-strand RNAs: discovery of viral and host determinants of RNP complex formationR21AI145003 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI PASCAL, STEVEN, SEMLER, BERT L · 2020 to 2021
$433k
NIAID NIH HHS R21 AI145003NIH HHS 1R21AI145003-01A1 , NIH P30 CA05417X4
6 · The paper itself

Abstract

Intrinsically disordered proteins play important roles in cell signaling, and dysregulation of these proteins is associated with several diseases. Prostate apoptosis response-4 (Par-4), an approximately 40 kilodalton proapoptotic tumor suppressor, is a predominantly intrinsically disordered protein whose downregulation has been observed in various cancers. The caspase-cleaved fragment of Par-4 (cl-Par-4) is active and plays a role in tumor suppression by inhibiting cell survival pathways. Here, we employed site-directed mutagenesis to create a cl-Par-4 point mutant (D313K). The expressed and purified D313K protein was characterized using biophysical techniques, and the results were compared to that of the wild-type (WT). We have previously demonstrated that WT cl-Par-4 attains a stable, compact, and helical conformation in the presence of a high level of salt at physiological pH. Here, we show that the D313K protein attains a similar conformation as the WT in the presence of salt, but at an approximately two times lower salt concentration. This establishes that the substitution of a basic residue for an acidic residue at position 313 alleviates inter-helical charge repulsion between dimer partners and helps to stabilize the structural conformation.

Indexed as

Intrinsically Disordered ProteinsNeoplasmsCircular DichroismGenes, Tumor SuppressorHumansMaleModels, MolecularMutagenesis, Site-DirectedProtein ConformationIntrinsically Disordered Proteinscircular dichroism (CD) spectroscopydynamic light scattering (DLS)intrinsically disordered proteins (IDPs)nuclear magnetic resonance (NMR) spectroscopyprostate apoptosis response-4 (Par-4)site-directed mutagenesistumor suppressor

Identifiers

PMID37189414
PMCPMC10135485
OpenAlexW4366456118

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.