Evidence map›Paper›PMID 37188959›Full record

ArticleNature chemical biology2023

A platform for distributed production of synthetic nitrated proteins in live bacteria.

Neil D Butler, Sabyasachi Sen, Lucas B Brown, Minwei Lin, Aditya M Kunjapur

Abstract read
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In one paragraph

Article in Nature chemical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Phage-assisted continuous evolution of enzymes for noncanonical tyrosine biosynthesis.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. In Vivo Biosynthesis and Direct Incorporation of Noncanonical Amino Acids into Proteins.Chembiochem : a European journal of chemical biology · 2025
    Review
  8. Article
  9. Article
  10. Using waste COScience advances · 2025
    Article
  11. Review
  12. Review
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Neil D ButlerDepartment of Chemical & Biomolecular Engineering, University of Delaware, Newark, DE, USA.
Sabyasachi SenDepartment of Chemical & Biomolecular Engineering, University of Delaware, Newark, DE, USA.
Lucas B BrownSystems, Synthetic, and Physical Biology Program, Rice University, Houston, TX, USA.ORCID http://orcid.org/0000-0003-3562-4676
Minwei LinDepartment of Chemical & Biomolecular Engineering, University of Delaware, Newark, DE, USA.
Aditya M KunjapurDepartment of Chemical & Biomolecular Engineering, University of Delaware, Newark, DE, USA. kunjapur@udel.edu.ORCID http://orcid.org/0000-0001-6869-9530
University of Delaware · USRice University · US

Funding

This renovation project will create over 1455 sq. ft. of state- of-the-art reseaP20GM104316 · NIGMS · UNIVERSITY OF DELAWARE · PI SCHMITZ, KARL ROBERT · 2014 to 2024
$26.8M
NIGMS NIH HHS P20 GM104316
6 · The paper itself

Abstract

The incorporation of the nonstandard amino acid para-nitro-L-phenylalanine (pN-Phe) within proteins has been used for diverse applications, including the termination of immune self-tolerance. However, the requirement for the provision of chemically synthesized pN-Phe to cells limits the contexts where this technology can be harnessed. Here we report the construction of a live bacterial producer of synthetic nitrated proteins by coupling metabolic engineering and genetic code expansion. We achieved the biosynthesis of pN-Phe in Escherichia coli by creating a pathway that features a previously uncharacterized nonheme diiron N-monooxygenase, which resulted in pN-Phe titers of 820 ± 130 µM after optimization. After we identified an orthogonal translation system that exhibited selectivity toward pN-Phe rather than a precursor metabolite, we constructed a single strain that incorporated biosynthesized pN-Phe within a specific site of a reporter protein. Overall, our study has created a foundational technology platform for distributed and autonomous production of nitrated proteins.

Indexed as

Escherichia coli ProteinsNitratesAmino AcidsEscherichia coliPhenylalanineAmino AcidsEscherichia coli ProteinsNitratesPhenylalanine

Identifiers

PMID37188959
OpenAlexW4376618587

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.