Evidence map›Paper›PMID 37188954›Full record

ArticleNature methods2023

Engineered allostery in light-regulated LOV-Turbo enables precise spatiotemporal control of proximity labeling in living cells.

Song-Yi Lee, Joleen S Cheah, Boxuan Zhao, Charles Xu, Heegwang Roh, Christina K Kim, Kelvin F Cho, Namrata D Udeshi, Steven A Carr, Alice Y Ting

Abstract read
In one paragraph

Article in Nature methods, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed.

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4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Song-Yi Lee *Department of Genetics, Stanford University, Stanford, CA, USA.
Joleen S Cheah *Department of Biology, Stanford University, Stanford, CA, USA.
Boxuan ZhaoDepartment of Genetics, Stanford University, Stanford, CA, USA.
Charles XuBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Heegwang RohDepartment of Chemistry, Stanford University, Stanford, CA, USA.ORCID 0000-0002-1549-2437
Christina K KimDepartment of Genetics, Stanford University, Stanford, CA, USA.
Kelvin F ChoDepartment of Genetics, Stanford University, Stanford, CA, USA.
Namrata D UdeshiBroad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID 0000-0001-5312-1402
Steven A CarrBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Alice Y TingDepartment of Genetics, Stanford University, Stanford, CA, USA. ayting@stanford.edu.ORCID 0000-0002-8277-5226

Funding

Supplement to Enhance Wellness and Resiliency in the Graduate EnvironmentT32GM007276 · NIGMS · STANFORD UNIVERSITY · PI MORRISON, ASHBY J. · 1985 to 2023
$32.9M
Mapping protein communication between organs in homeostasis and diseaseR01DK121409 · NIDDK · HARVARD MEDICAL SCHOOL · PI CARR, STEVEN A, MCMAHON, ANDREW P. · 2018 to 2022
$8.3M
RIGERR: Resources for Investigating Genetic and Epigenetic Regulation of Renal DiseaseRC2DK129964 · NIDDK · UNIVERSITY OF ARIZONA · PI MINGYU LIANG · 2022 to 2026
$4.9M
Linkage of Hospitalized Opioid Users to BuprenorphineR01DA026223 · NIDA · BUTLER HOSPITAL (PROVIDENCE, RI) · PI STEIN, MICHAEL D · 2009 to 2013
$1.7M
NIDA NIH HHS R01 DA026223NIDDK NIH HHS R01 DK121409NIDDK NIH HHS RC2 DK129964NIGMS NIH HHS T32 GM007276
6 · The paper itself

Abstract

The incorporation of light-responsive domains into engineered proteins has enabled control of protein localization, interactions and function with light. We integrated optogenetic control into proximity labeling, a cornerstone technique for high-resolution proteomic mapping of organelles and interactomes in living cells. Through structure-guided screening and directed evolution, we installed the light-sensitive LOV domain into the proximity labeling enzyme TurboID to rapidly and reversibly control its labeling activity with low-power blue light. 'LOV-Turbo' works in multiple contexts and dramatically reduces background in biotin-rich environments such as neurons. We used LOV-Turbo for pulse-chase labeling to discover proteins that traffic between endoplasmic reticulum, nuclear and mitochondrial compartments under cellular stress. We also showed that instead of external light, LOV-Turbo can be activated by bioluminescence resonance energy transfer from luciferase, enabling interaction-dependent proximity labeling. Overall, LOV-Turbo increases the spatial and temporal precision of proximity labeling, expanding the scope of experimental questions that can be addressed with proximity labeling.

Indexed as

MitochondriaProteomicsBiotinEndoplasmic ReticulumBiotin

Identifiers

PMID37188954
PMCPMC10539039

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.