Evidence map›Paper›PMID 37188853›Full record

ArticleNature plants2023

A redundant transcription factor network steers spatiotemporal Arabidopsis triterpene synthesis.

Trang Hieu Nguyen, Louis Thiers, Alex Van Moerkercke, Yuechen Bai, Patricia Fernández-Calvo, Max Minne, Thomas Depuydt, Maite Colinas, Kevin Verstaen, Gert Van Isterdael and 7 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Nature plants, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 27 citations in OpenAlex.

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  10. Understanding metabolic diversification in plants: branchpoints in the evolution of specialized metabolism.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 5 countries.

Trang Hieu NguyenDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0003-1051-8068
Louis ThiersDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0002-8650-508X
Alex Van MoerkerckeDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Yuechen BaiDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0002-2314-8660
Patricia Fernández-CalvoDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0002-1576-9651
Max MinneDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0003-3089-2284
Thomas DepuydtDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0001-5889-3962
Maite ColinasDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0001-7053-2983
Kevin VerstaenVIB Single Cell Core, Ghent-Leuven, Belgium.ORCID http://orcid.org/0000-0003-3582-0298
Gert Van IsterdaelVIB Flow Core, VIB Center for Inflammation Research, Ghent, Belgium.ORCID http://orcid.org/0000-0001-6626-1316
Hans-Wilhelm NützmannDepartment of Biochemistry and Metabolism, John Innes Centre, Norwich, UK.
Anne OsbournDepartment of Biochemistry and Metabolism, John Innes Centre, Norwich, UK.ORCID http://orcid.org/0000-0003-2195-5810
Yvan SaeysVIB Center for Inflammation Research, Data Mining and Modelling for Biomedicine, Ghent, Belgium.
Bert De RybelDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0002-9551-042X
Klaas VandepoeleDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Andrés RitterDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0001-7011-6824
Alain GoossensDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium. alain.goossens@psb.vib-ugent.be.ORCID http://orcid.org/0000-0002-1599-551X
Ghent University · BEJohn Innes Centre · GBFudan University · CNVIB-UGent Center for Inflammation Research · BEVIB-UGent Center for Plant Systems Biology · BEVlaams Instituut voor Biotechnologie · BE

Funding

Biotechnology and Biological Sciences Research Council BBS/E/J/000PR9790
6 · The paper itself

Abstract

Plant specialized metabolites modulate developmental and ecological functions and comprise many therapeutic and other high-value compounds. However, the mechanisms determining their cell-specific expression remain unknown. Here we describe the transcriptional regulatory network that underlies cell-specific biosynthesis of triterpenes in Arabidopsis thaliana root tips. Expression of thalianol and marneral biosynthesis pathway genes depends on the phytohormone jasmonate and is limited to outer tissues. We show that this is promoted by the activity of redundant bHLH-type transcription factors from two distinct clades and coactivated by homeodomain factors. Conversely, the DOF-type transcription factor DAG1 and other regulators prevent expression of the triterpene pathway genes in inner tissues. We thus show how precise expression of triterpene biosynthesis genes is determined by a robust network of transactivators, coactivators and counteracting repressors.

Indexed as

ArabidopsisArabidopsis ProteinsTriterpenesBasic Helix-Loop-Helix ProteinsGene Expression Regulation, PlantTranscription FactorsArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsTranscription FactorsTriterpenes

Identifiers

PMID37188853
OpenAlexW4376604296

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.