Evidence map›Paper›PMID 37188681›Full record

ArticleNature communications2023

Structural basis for breadth development in the HIV-1 V3-glycan targeting DH270 antibody clonal lineage.

Rory Henderson, Ye Zhou, Victoria Stalls, Kevin Wiehe, Kevin O Saunders, Kshitij Wagh, Kara Anasti, Maggie Barr, Robert Parks, S Munir Alam and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 23 citations in OpenAlex.

  1. Deletions in variable region 1 of the HIV envelope accelerate V3-glycan bNAb induction in SHIV-infected rhesus macaques.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  7. LC-MS/MS method for quantifying the HIV-1 broadly neutralizing antibody PGT 121.414.LS in human serum.Journal of chromatography. B, Analytical technologies in the biomedical and life sciences · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Rory Henderson *Department of Medicine and Immunology, Duke University School of Medicine, Durham, NC, USA. rory.henderson@duke.edu.ORCID 0000-0002-4301-6382
Ye Zhou *Department of Computer Science, Duke University, Durham, NC, USA.
Victoria StallsDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC, USA.
Kevin WieheDepartment of Medicine and Immunology, Duke University School of Medicine, Durham, NC, USA.
Kevin O SaundersDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC, USA.ORCID 0000-0001-7399-7954
Kshitij WaghTheoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, NM, USA.
Kara AnastiDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC, USA.
Maggie BarrDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC, USA.
Robert ParksDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC, USA.
S Munir AlamDepartment of Medicine and Immunology, Duke University School of Medicine, Durham, NC, USA.
Bette KorberTheoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, NM, USA.ORCID 0000-0002-2026-5757
Barton F HaynesDepartment of Medicine and Immunology, Duke University School of Medicine, Durham, NC, USA. barton.haynes@duke.edu.ORCID 0000-0002-7643-9023
Alberto BartesaghiDepartment of Computer Science, Duke University, Durham, NC, USA. alberto.bartesaghi@duke.edu.
Priyamvada AcharyaDuke Human Vaccine Institute, Duke University School of Medicine, Durham, NC, USA. priyamvada.acharya@duke.edu.ORCID 0000-0002-0089-277X
Duke University · USLos Alamos National Laboratory · US

Funding

Nonhuman primate studies for development of a prototype HIV vaccine that induces broadly neutralizing antibodiesUM1AI144371 · NIAID · DUKE UNIVERSITY · PI HAYNES, BARTON F. · 2019 to 2025
$190.4M
NCCAT: National Center for CryoEM Access and Training- Supplement for Windows 10 and FFIU24GM129539 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2018 to 2023
$53.9M
Project 3 - Dynamics of latent HIV-1 reservoirs: High resolution antigenic mapping and strategies to block reboundU54AI170752 · NIAID · DUKE UNIVERSITY · PI Derek Wilson Cain · 2022 to 2026
$32.0M
Targeting early metastable intermediates of the SARS-CoV-2 spike for vaccine and therapeutics developmentR01AI145687 · NIAID · DUKE UNIVERSITY · PI Priyamvada Acharya · 2019 to 2026
$6.9M
A Computational Platform for In-Situ Structure Determination at Near-Atomic Resolution using Cryo-Electron TomographyR01GM141223 · NIGMS · DUKE UNIVERSITY · PI BARTESAGHI, ALBERTO · 2021 to 2024
$1.5M
Data commons for 'omic, microscopy and analysis core facilitiesS10OD018164 · OD · DUKE UNIVERSITY · PI WRAY, GREGORY A. · 2014 to 2014
$598k
NIAID NIH HHS R01 AI145687NIAID NIH HHS U54 AI170752NIAID NIH HHS UM1 AI144371NIGMS NIH HHS R01 GM141223NIGMS NIH HHS U24 GM129539NIH HHS S10 OD018164
6 · The paper itself

Abstract

Antibody affinity maturation enables adaptive immune responses to a wide range of pathogens. In some individuals broadly neutralizing antibodies develop to recognize rapidly mutating pathogens with extensive sequence diversity. Vaccine design for pathogens such as HIV-1 and influenza has therefore focused on recapitulating the natural affinity maturation process. Here, we determine structures of antibodies in complex with HIV-1 Envelope for all observed members and ancestral states of the broadly neutralizing HIV-1 V3-glycan targeting DH270 antibody clonal B cell lineage. These structures track the development of neutralization breadth from the unmutated common ancestor and define affinity maturation at high spatial resolution. By elucidating contacts mediated by key mutations at different stages of antibody development we identified sites on the epitope-paratope interface that are the focus of affinity optimization. Thus, our results identify bottlenecks on the path to natural affinity maturation and reveal solutions for these that will inform immunogen design aimed at eliciting a broadly neutralizing immune response by vaccination.

Indexed as

HIV-1HIV InfectionsAntibodies, NeutralizingHIV AntibodiesHumansPolysaccharidesAntibodies, NeutralizingHIV AntibodiesPolysaccharides

Identifiers

PMID37188681
PMCPMC10184639
OpenAlexW4376601533

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.