Evidence map›Paper›PMID 37188670›Full record

ArticleNature communications2023

DNA methylation markers for kidney function and progression of diabetic kidney disease.

Kelly Yichen Li, Claudia Ha Ting Tam, Hongbo Liu, Samantha Day, Cadmon King Poo Lim, Wing Yee So, Chuiguo Huang, Guozhi Jiang, Mai Shi, Heung Man Lee and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 50 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 3 countries.

Kelly Yichen LiDepartment of Computer Science and Engineering, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong.ORCID 0000-0001-7377-5729
Claudia Ha Ting TamDepartment of Medicine and Therapeutics, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong.ORCID 0000-0002-9169-0013
Hongbo LiuDepartment of Medicine, Renal Electrolyte and Hypertension Division, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-0733-8616
Samantha DayPhoenix Epidemiology and Clinical Research Branch, National Institute of Diabetes and Digestive and Kidney Diseases, Phoenix, AZ, USA.ORCID 0000-0002-9818-0972
Cadmon King Poo LimDepartment of Medicine and Therapeutics, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong.
Wing Yee SoDepartment of Medicine and Therapeutics, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong.
Chuiguo HuangDepartment of Medicine and Therapeutics, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong.ORCID 0000-0003-3442-4760
Guozhi JiangDepartment of Medicine and Therapeutics, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong.
Mai ShiDepartment of Medicine and Therapeutics, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong.ORCID 0000-0002-2798-3268
Heung Man LeeDepartment of Medicine and Therapeutics, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong.ORCID 0000-0002-5199-1778
TRANSCEND Consortium
Hui-Yao LanDepartment of Medicine and Therapeutics, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong.ORCID 0000-0003-4283-9755
Cheuk-Chun SzetoDepartment of Medicine and Therapeutics, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong.ORCID 0000-0002-8898-8505
Robert L HansonPhoenix Epidemiology and Clinical Research Branch, National Institute of Diabetes and Digestive and Kidney Diseases, Phoenix, AZ, USA.ORCID 0000-0002-4252-7068
Robert G NelsonPhoenix Epidemiology and Clinical Research Branch, National Institute of Diabetes and Digestive and Kidney Diseases, Phoenix, AZ, USA.
Katalin SusztakDepartment of Medicine, Renal Electrolyte and Hypertension Division, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-1005-3726
Juliana C N ChanDepartment of Medicine and Therapeutics, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong.ORCID 0000-0003-1325-1194
Kevin Y YipDepartment of Computer Science and Engineering, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong. kevinyip@cse.cuhk.edu.hk.ORCID 0000-0001-5516-9944
Ronald C W MaDepartment of Medicine and Therapeutics, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong. rcwma@cuhk.edu.hk.ORCID 0000-0002-1227-803X
Chinese University of Hong Kong · HKNational Institute of Diabetes and Digestive and Kidney Diseases · USUniversity of Pennsylvania · USMidwestern University · USSun Yat-sen University · CN

Funding

Tumor Microenvironment and Cancer ImmunologyP30CA030199 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI ELENA B PASQUALE · 1985 to 2026
$107.2M
Spatial Mapping Senescent Cells Across the Mouse Lifespan by Multiplex Transcriptomics and EpigenomicsU54AG079758 · NIA · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI PETER D. ADAMS · 2022 to 2026
$12.1M
Epidemiology, Pathophysiology and Treatment of Diabetic NephropathyZIADK069062 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI NELSON, ROBERT G · 2009 to 2023
$10.1M
Role of the Notch Pathway in Kidney InjuryR01DK076077 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI KATALIN SUSZTAK · 2007 to 2026
$8.0M
Genetic Epidemiology of Diabetic NephropathyZIADK069094 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI HANSON, ROBERT · 2009 to 2025
$7.7M
Epigenetics of Chronic Kidney DiseaseR01DK087635 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI KATALIN SUSZTAK · 2009 to 2026
$7.0M
APOL1 associated kidney diseaseR01DK105821 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI SUSZTAK, KATALIN · 2016 to 2024
$4.6M
Novel Strategy to Quantitate Delayed Aging by Caloric RestrictionR21AG075483 · NIA · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI TERSKIKH, ALEXEY V · 2022 to 2023
$960k
NCI NIH HHS P30 CA030199NIA NIH HHS R21 AG075483NIA NIH HHS U54 AG079758NIDDK NIH HHS R01 DK076077NIDDK NIH HHS R01 DK087635NIDDK NIH HHS R01 DK105821
6 · The paper itself

Abstract

Epigenetic markers are potential biomarkers for diabetes and related complications. Using a prospective cohort from the Hong Kong Diabetes Register, we perform two independent epigenome-wide association studies to identify methylation markers associated with baseline estimated glomerular filtration rate (eGFR) and subsequent decline in kidney function (eGFR slope), respectively, in 1,271 type 2 diabetes subjects. Here we show 40 (30 previously unidentified) and eight (all previously unidentified) CpG sites individually reach epigenome-wide significance for baseline eGFR and eGFR slope, respectively. We also develop a multisite analysis method, which selects 64 and 37 CpG sites for baseline eGFR and eGFR slope, respectively. These models are validated in an independent cohort of Native Americans with type 2 diabetes. Our identified CpG sites are near genes enriched for functional roles in kidney diseases, and some show association with renal damage. This study highlights the potential of methylation markers in risk stratification of kidney disease among type 2 diabetes individuals.

Indexed as

Diabetes Mellitus, Type 2Diabetic NephropathiesRenal Insufficiency, ChronicDisease ProgressionDNA MethylationGenetic MarkersHumansKidneyProspective StudiesGenetic Markers

Identifiers

PMID37188670
PMCPMC10185566
OpenAlexW4376641836

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.