Evidence map›Paper›PMID 37186603›Full record

ArticlePLoS genetics2023

Rab8, Rab11, and Rab35 coordinate lumen and cilia formation during zebrafish left-right organizer development.

Abrar A Aljiboury, Eric Ingram, Nikhila Krishnan, Favour Ononiwu, Debadrita Pal, Julie Manikas, Christopher Taveras, Nicole A Hall, Jonah Da Silva, Judy Freshour and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 11 citations in OpenAlex.

  1. Transcriptional divergence of the zebrafishbioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Positioning centrioles and centrosomes.The Journal of cell biology · 2024
    Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Abrar A AljibouryBiology Department, Syracuse University, Syracuse, New York, United States of America.ORCID 0000-0002-0420-4399
Eric IngramBiology Department, Syracuse University, Syracuse, New York, United States of America.
Nikhila KrishnanBiology Department, Syracuse University, Syracuse, New York, United States of America.
Favour OnoniwuBiology Department, Syracuse University, Syracuse, New York, United States of America.
Debadrita PalBiology Department, Syracuse University, Syracuse, New York, United States of America.
Julie ManikasBiology Department, Syracuse University, Syracuse, New York, United States of America.
Christopher TaverasBiology Department, Syracuse University, Syracuse, New York, United States of America.
Nicole A HallBiology Department, Syracuse University, Syracuse, New York, United States of America.
Jonah Da SilvaBiology Department, Syracuse University, Syracuse, New York, United States of America.
Judy FreshourBiology Department, Syracuse University, Syracuse, New York, United States of America.
Heidi HehnlyBiology Department, Syracuse University, Syracuse, New York, United States of America.ORCID 0000-0001-6660-5254
Syracuse University · US

Funding

The relationship between Rab11-endosomes and the centrosome during divisionR01GM127621 · NIGMS · SYRACUSE UNIVERSITY · PI HEHNLY, HEIDI · 2018 to 2022
$1.8M
Cell cycle dependent mechanisms triggering lumen formation in vivoR01GM130874 · NIGMS · SYRACUSE UNIVERSITY · PI HEHNLY, HEIDI · 2021 to 2024
$1.2M
NIGMS NIH HHS R01 GM127621NIGMS NIH HHS R01 GM130874
6 · The paper itself

Abstract

An essential process during Danio rerio's left-right organizer (Kupffer's Vesicle, KV) formation is the formation of a motile cilium by developing KV cells which extends into the KV lumen. Beating of motile cilia within the KV lumen directs fluid flow to establish the embryo's left-right axis. However, the timepoint at which KV cells start to form cilia and how cilia formation is coordinated with KV lumen formation have not been examined. We identified that nascent KV cells form cilia at their centrosomes at random intracellular positions that then move towards a forming apical membrane containing cystic fibrosis transmembrane conductance regulator (CFTR). Using optogenetic clustering approaches, we found that Rab35 positive membranes recruit Rab11 to modulate CFTR delivery to the apical membrane, which is required for lumen opening, and subsequent cilia extension into the lumen. Once the intracellular cilia reach the CFTR positive apical membrane, Arl13b-positive cilia extend and elongate in a Rab8 dependent manner into the forming lumen once the lumen reaches an area of 300 μm2. These studies demonstrate the need to acutely coordinate Rab8, Rab11, and Rab35-mediated membrane trafficking events to ensure appropriate timing in lumen and cilia formation during KV development.

Indexed as

Cystic Fibrosis Transmembrane Conductance RegulatorZebrafishAnimalsBody PatterningCiliaEmbryo, Nonmammalianrab11 GTP-Binding Proteinsrab GTP-Binding ProteinsZebrafish ProteinsCystic Fibrosis Transmembrane Conductance Regulatorrab11 GTP-Binding Proteinsrab35 protein, zebrafishRab8a protein, zebrafishrab GTP-Binding ProteinsZebrafish Proteins

Identifiers

PMID37186603
PMCPMC10212091
OpenAlexW4376643062

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.