Evidence map›Paper›PMID 37185989›Full record

ArticleCommunications biology2023

Structural insights into the broad protection against H1 influenza viruses by a computationally optimized hemagglutinin vaccine.

John V Dzimianski, Julianna Han, Giuseppe A Sautto, Sara M O'Rourke, Joseph M Cruz, Spencer R Pierce, Jeffrey W Ecker, Michael A Carlock, Kaito A Nagashima, Jarrod J Mousa and 3 more

Abstract read
In one paragraph

Article in Communications biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Unlocking the potential ofFrontiers in bioinformatics · 2025
    Review
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

John V DzimianskiDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.ORCID 0000-0002-2447-146X
Julianna HanDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.ORCID 0000-0002-3402-2609
Giuseppe A SauttoFlorida Research and Innovation Center, Cleveland Clinic, Port Saint Lucie, FL, USA.ORCID 0000-0002-0273-2235
Sara M O'RourkeDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.
Joseph M CruzDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.
Spencer R PierceCenter for Vaccines and Immunology, College of Veterinary Medicine, University of Georgia, Athens, GA, USA.
Jeffrey W EckerCenter for Vaccines and Immunology, College of Veterinary Medicine, University of Georgia, Athens, GA, USA.
Michael A CarlockCenter for Vaccines and Immunology, College of Veterinary Medicine, University of Georgia, Athens, GA, USA.
Kaito A NagashimaCenter for Vaccines and Immunology, College of Veterinary Medicine, University of Georgia, Athens, GA, USA.ORCID 0000-0002-7501-6651
Jarrod J MousaCenter for Vaccines and Immunology, College of Veterinary Medicine, University of Georgia, Athens, GA, USA.ORCID 0000-0003-4709-2478
Ted M RossFlorida Research and Innovation Center, Cleveland Clinic, Port Saint Lucie, FL, USA.ORCID 0000-0003-1947-7469
Andrew B WardDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.ORCID 0000-0001-7153-3769
Rebecca M DuBoisDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA. rmdubois@ucsc.edu.ORCID 0000-0003-4185-5673

Funding

COLLABORATIVE INFLUENZA VACCINE INNOVATION CENTER: UNIVERSAL INFLUENZA VACCINE RESEARCH75N93019C00051 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KRAMMER, FLORIAN · 2019 to 2025
$105.4M
COVID Supplement - COMPONENT A OF THE COLLABORATIVE INFLUENZA VACCINE INNOVATION CENTERS (CIVICS) PROGRAM TO DESIGN AND EVALUATE INNOVATIVE INFLUENZA VACCINE APPROACHES,75N93019C00052 · NIAID · UNIVERSITY OF GEORGIA · PI ROSS, TED · 2019 to 2025
$74.6M
User Training & OutreachP30GM138396 · NIGMS · UCHICAGO ARGONNE, LLC · PI ROBERT F. FISCHETTI, JANET L. SMITH · 2020 to 2026
$34.3M
The MARC Program at UCSCT34GM140956 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI RUBIN, SETH MICHAEL · 2021 to 2025
$4.2M
Therapeutic antibodies to treat Pneumocystis pneumonia in a nonhuman primate model of HIV infectionK01OD026569 · OD · UNIVERSITY OF GEORGIA · PI MOUSA, JARROD · 2018 to 2020
$1.0M
An Octet Bio-layer Interferometer for Macromolecular Interaction Studies at UCSCS10OD027012 · OD · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI RUBIN, SETH MICHAEL · 2019 to 2019
$370k
NIAID NIH HHS 75N93019C00051NIAID NIH HHS 75N93019C00052NIGMS NIH HHS P30 GM138396NIGMS NIH HHS T34 GM140956NIH HHS K01 OD026569NIH HHS S10 OD027012
6 · The paper itself

Abstract

Influenza virus poses an ongoing human health threat with pandemic potential. Due to mutations in circulating strains, formulating effective vaccines remains a challenge. The use of computationally optimized broadly reactive antigen (COBRA) hemagglutinin (HA) proteins is a promising vaccine strategy to protect against a wide range of current and future influenza viruses. Though effective in preclinical studies, the mechanistic basis driving the broad reactivity of COBRA proteins remains to be elucidated. Here, we report the crystal structure of the COBRA HA termed P1 and identify antigenic and glycosylation properties that contribute to its immunogenicity. We further report the cryo-EM structure of the P1-elicited broadly neutralizing antibody 1F8 bound to COBRA P1, revealing 1F8 to recognize an atypical receptor binding site epitope via an unexpected mode of binding.

Indexed as

Influenza A Virus, H1N1 SubtypeInfluenza VaccinesOrthomyxoviridae InfectionsAntibodies, ViralHemagglutinin Glycoproteins, Influenza VirusHemagglutininsHumansAntibodies, ViralHemagglutinin Glycoproteins, Influenza VirusHemagglutininsInfluenza Vaccines

Identifiers

PMID37185989
PMCPMC10126545

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.