Evidence map›Paper›PMID 37185266›Full record

ArticleNature communications2023

Millisecond cryo-trapping by the spitrobot crystal plunger simplifies time-resolved crystallography.

Pedram Mehrabi, Sihyun Sung, David von Stetten, Andreas Prester, Caitlin E Hatton, Stephan Kleine-Döpke, Alexander Berkes, Gargi Gore, Jan-Philipp Leimkohl, Hendrik Schikora and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Cefdinir binding to a class A β-lactamase revealed by serial cryo-crystallography.Acta crystallographica. Section D, Structural biology · 2026
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  11. The time revolution in macromolecular crystallography.Structural dynamics (Melville, N.Y.) · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Pedram Mehrabi *Institute for Nanostructure and Solid-State Physics, Universität Hamburg, Hamburg, Germany. pedram.mehrabi@uni-hamburg.de.ORCID 0000-0003-3211-6959
Sihyun SungEuropean Molecular Biology Laboratory, Hamburg Unit, Hamburg, Germany.ORCID 0000-0001-5820-4696
David von StettenEuropean Molecular Biology Laboratory, Hamburg Unit, Hamburg, Germany.ORCID 0000-0001-7906-9788
Andreas PresterUniversity Medical Center Hamburg-Eppendorf (UKE), Hamburg, Germany.ORCID 0000-0003-2738-7682
Caitlin E HattonInstitute for Nanostructure and Solid-State Physics, Universität Hamburg, Hamburg, Germany.ORCID 0000-0002-8446-0711
Stephan Kleine-DöpkeInstitute for Nanostructure and Solid-State Physics, Universität Hamburg, Hamburg, Germany.ORCID 0009-0001-5513-9873
Alexander BerkesInstitute for Nanostructure and Solid-State Physics, Universität Hamburg, Hamburg, Germany.ORCID 0009-0000-9579-2255
Gargi GoreInstitute for Nanostructure and Solid-State Physics, Universität Hamburg, Hamburg, Germany.ORCID 0009-0003-0585-7038
Jan-Philipp LeimkohlMax Planck Institute for the Structure and Dynamics of Matter, Hamburg, Germany.ORCID 0009-0008-8944-4244
Hendrik SchikoraMax Planck Institute for the Structure and Dynamics of Matter, Hamburg, Germany.
Martin KolleweMax Planck Institute for the Structure and Dynamics of Matter, Hamburg, Germany.
Holger RohdeUniversity Medical Center Hamburg-Eppendorf (UKE), Hamburg, Germany.ORCID 0000-0001-8587-4433
Matthias WilmannsEuropean Molecular Biology Laboratory, Hamburg Unit, Hamburg, Germany.ORCID 0000-0002-4643-5435
Friedjof TellkampMax Planck Institute for the Structure and Dynamics of Matter, Hamburg, Germany. friedjof.tellkamp@mpsd.mpg.de.ORCID 0000-0002-5670-3544
Eike C Schulz *Institute for Nanostructure and Solid-State Physics, Universität Hamburg, Hamburg, Germany. ec.schulz@uke.de.ORCID 0000-0002-1685-8605

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We introduce the spitrobot, a protein crystal plunger, enabling reaction quenching via cryo-trapping with a time-resolution in the millisecond range. Protein crystals are mounted on canonical micromeshes on an electropneumatic piston, where the crystals are kept in a humidity and temperature-controlled environment, then reactions are initiated via the liquid application method (LAMA) and plunging into liquid nitrogen is initiated after an electronically set delay time to cryo-trap intermediate states. High-magnification images are automatically recorded before and after droplet deposition, prior to plunging. The SPINE-standard sample holder is directly plunged into a storage puck, enabling compatibility with high-throughput infrastructure. Here we demonstrate binding of glucose and 2,3-butanediol in microcrystals of xylose isomerase, and of avibactam and ampicillin in microcrystals of the extended spectrum beta-lactamase CTX-M-14. We also trap reaction intermediates and conformational changes in macroscopic crystals of tryptophan synthase to demonstrate that the spitrobot enables insight into catalytic events.

Indexed as

ProteinsCrystallographyCrystallography, X-RayHumidityTemperatureProteins

Identifiers

PMID37185266
PMCPMC10130016

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.