Evidence map›Paper›PMID 37185252›Full record

ArticleNature communications2023

Low complexity domains of the nucleocapsid protein of SARS-CoV-2 form amyloid fibrils.

Einav Tayeb-Fligelman, Jeannette T Bowler, Christen E Tai, Michael R Sawaya, Yi Xiao Jiang, Gustavo Garcia, Sarah L Griner, Xinyi Cheng, Lukasz Salwinski, Liisa Lutter and 18 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 5 institutions in 1 country.

Einav Tayeb-FligelmanDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.
Jeannette T BowlerDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0003-2428-3095
Christen E TaiDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0002-3816-3134
Michael R SawayaDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0003-0874-9043
Yi Xiao JiangDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0003-1433-4952
Gustavo GarciaDepartment of Molecular and Medical Pharmacology, UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0002-1649-9251
Sarah L GrinerDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0002-4500-2419
Xinyi ChengDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0003-1654-4363
Lukasz SalwinskiDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0003-4522-1969
Liisa LutterDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.
Paul M SeidlerDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.
Jiahui LuDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.
Gregory M RosenbergDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0002-1297-1715
Ke HouDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0003-3869-2076
Romany AbskharonDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.
Hope PanDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0001-6509-6224
Chih-Te ZeeDepartment of Chemistry and Biochemistry, UCLA, Los Angeles, CA, 90095, USA.
David R BoyerDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0002-4487-0230
Yan LiDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0002-6053-0973
Daniel H AndersonDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.
Kevin A MurrayDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.
Genesis FalconUCLA-DOE Institute of Genomics and Proteomics, UCLA, Los Angeles, CA, 90095, USA.
Duilio CascioUCLA-DOE Institute of Genomics and Proteomics, UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0001-8285-754X
Lorena SaelicesDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0002-1904-2150
Robert DamoiseauxDepartment of Molecular and Medical Pharmacology, UCLA, Los Angeles, CA, 90095, USA.
Vaithilingaraja ArumugaswamiDepartment of Molecular and Medical Pharmacology, UCLA, Los Angeles, CA, 90095, USA.
Feng GuoDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.ORCID 0000-0002-6245-1486
David S EisenbergDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA. david@mbi.ucla.edu.ORCID 0000-0003-2432-5419
Howard Hughes Medical Institute · USUniversity of California, Los Angeles · USCalifornia NanoSystems Institute · USUCLA Medical Center · USUniversity of Southern California · US

Funding

The Stanford-SLAC CryoEM Center supplementU24GM129541 · NIGMS · STANFORD UNIVERSITY · PI CHIU, WAH, HEDMAN, BRITT · 2018 to 2023
$54.8M
User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI STEVEN E EALICK · 2018 to 2026
$34.2M
Tollip inhibits IL-33 signaling during airway influenza virus infectionU19AI125357 · NIAID · UNIVERSITY OF ARIZONA · PI KRAFT, MONICA · 2016 to 2025
$14.7M
Metabolic and epigenetic reprogramming of vital organs in SARS-CoV-2 induced systemic toxicityR01DK132735 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ARUMUGASWAMI, VAITHILINGARAJA, DEB, ARJUN · 2021 to 2023
$6.0M
Interplay between AMPK and Hippo Signaling Regulates Ocular Antiviral Response to Zika virus infectionR01EY032149 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Vaithilingaraja Arumugaswami, Ashok Kumar · 2021 to 2026
$2.8M
Closing the gap between structural biology and translational science for amyloid diseasesDP2HL163810 · NHLBI · UT SOUTHWESTERN MEDICAL CENTER · PI SAELICES GOMEZ, LORENA · 2021 to 2024
$2.5M
Developing three-dimensional antisense oligonucleotide drugs against COVID-19R01AI163216 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GUO, FENG · 2021 to 2025
$2.3M
ENHANCING THE INTERNATIONAL MOLECULAR EXCHANGE (IMEX): PROVIDING AN IMPROVED COMMUNITY-ORIENTED MOLECULAR INTERACTIONS RESOURCER01GM123126 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI PELLEGRINI, MATTEO · 2018 to 2021
$2.0M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
Development of inhibitors and diagnostics for amyloid diseasesRF1AG048120 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI EISENBERG, DAVID · 2019 to 2019
$1.9M
Development of inhibitors for systemic amyloid diseasesR01AG048120 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI EISENBERG, DAVID · 2014 to 2018
$1.9M
HIGH-END CRYOEM INSTRUMENT FOR UCLA ELECTRON IMAGING CTR FOR NANOMACHINES: AIDSS10RR023057 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHOU, Z HONG · 2006 to 2006
$1.6M
NCRR NIH HHS S10 RR023057NEI NIH HHS R01 EY032149NHLBI NIH HHS DP2 HL163810NIAID NIH HHS R01 AI163216NIAID NIH HHS U19 AI125357NIA NIH HHS R01 AG048120NIA NIH HHS RF1 AG048120NIDDK NIH HHS R01 DK132735NIGMS NIH HHS P30 GM124165NIGMS NIH HHS R01 GM123126NIGMS NIH HHS U24 GM129541NIH HHS S10 OD021527
6 · The paper itself

Abstract

The self-assembly of the Nucleocapsid protein (NCAP) of SARS-CoV-2 is crucial for its function. Computational analysis of the amino acid sequence of NCAP reveals low-complexity domains (LCDs) akin to LCDs in other proteins known to self-assemble as phase separation droplets and amyloid fibrils. Previous reports have described NCAP's propensity to phase-separate. Here we show that the central LCD of NCAP is capable of both, phase separation and amyloid formation. Within this central LCD we identified three adhesive segments and determined the atomic structure of the fibrils formed by each. Those structures guided the design of G12, a peptide that interferes with the self-assembly of NCAP and demonstrates antiviral activity in SARS-CoV-2 infected cells. Our work, therefore, demonstrates the amyloid form of the central LCD of NCAP and suggests that amyloidogenic segments of NCAP could be targeted for drug development.

Indexed as

AmyloidCoronavirus Nucleocapsid ProteinsCOVID-19Amyloidogenic ProteinsHumansNucleocapsid ProteinsPeptidesProtein DomainsSARS-CoV-2AmyloidAmyloidogenic ProteinsCoronavirus Nucleocapsid ProteinsNucleocapsid ProteinsPeptides

Identifiers

PMID37185252
PMCPMC10127185
OpenAlexW4366985933

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.