Evidence map›Paper›PMID 37185232›Full record

ArticleJournal for immunotherapy of cancer2023

Geospatial characterization of immune cell distributions and dynamics across the microenvironment in clear cell renal cell carcinoma.

Nicholas H Chakiryan, Youngchul Kim, Anders Berglund, Andrew Chang, Gregory J Kimmel, Ali Hajiran, Jonathan Nguyen, Carlos Moran-Segura, Daryoush Saeed-Vafa, Esther N Katende and 14 more

Open access · goldAbstract read
In one paragraph

Article in Journal for immunotherapy of cancer, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 23 citations in OpenAlex.

  1. APOEScience advances · 2026
    Article
  2. Article
  3. Spatial Clustering of Recently Activated Cytotoxic Lymphocytes Improves Association with Overall Survival in Women with High-Grade Serous Ovarian Cancer.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Orchestration of Tumor-Associated Macrophages in the Tumor Cell-Macrophage-CD8International journal of biological sciences · 2025
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 4 institutions in 2 countries.

Nicholas H ChakiryanDepartment of Genitourinary Oncology, H Lee Moffitt Cancer Center and Research Institute, Tampa, Florida, USA.ORCID 0000-0001-9263-8957
Youngchul KimBiostatistics and Bioinformatics, H Lee Moffitt Cancer Center and Research Institute, Tampa, Florida, USA.
Anders BerglundBiostatistics and Bioinformatics, H Lee Moffitt Cancer Center and Research Institute, Tampa, Florida, USA.ORCID 0000-0002-0393-3530
Andrew ChangDepartment of Genitourinary Oncology, H Lee Moffitt Cancer Center and Research Institute, Tampa, Florida, USA.
Gregory J KimmelIntegrated Mathematical Oncology Department, H Lee Moffitt Cancer Center and Research Institute, Tampa, Florida, USA.
Ali HajiranDepartment of Genitourinary Oncology, H Lee Moffitt Cancer Center and Research Institute, Tampa, Florida, USA.
Jonathan NguyenDepartment of Pathology, H Lee Moffitt Cancer Center, Tampa, Florida, USA.
Carlos Moran-SeguraDepartment of Pathology, H Lee Moffitt Cancer Center, Tampa, Florida, USA.ORCID 0000-0001-8702-0554
Daryoush Saeed-VafaDepartment of Pathology, H Lee Moffitt Cancer Center, Tampa, Florida, USA.
Esther N KatendeDepartment of Genitourinary Oncology, H Lee Moffitt Cancer Center and Research Institute, Tampa, Florida, USA.
Neale Lopez-BlancoDepartment of Pathology, H Lee Moffitt Cancer Center, Tampa, Florida, USA.
Jad ChahoudDepartment of Genitourinary Oncology, H Lee Moffitt Cancer Center and Research Institute, Tampa, Florida, USA.ORCID 0000-0002-8435-0264
Phillip RappoldUrology Service, Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, New York, USA.ORCID 0000-0002-2977-1023
Philippe E SpiessDepartment of Genitourinary Oncology, H Lee Moffitt Cancer Center and Research Institute, Tampa, Florida, USA.ORCID 0000-0002-5723-1972
Michelle FournierTissue Core, H Lee Moffitt Cancer Center and Research Institute, Tampa, Florida, USA.
Daniel JeongDepartment of Radiology, H Lee Moffitt Cancer Center, Tampa, Florida, USA.
Liang WangDepartment of Tumor Biology, H Lee Moffitt Cancer Center and Research Institute, Tampa, Florida, USA.ORCID 0000-0002-9364-8572
Jamie K TeerBiostatistics and Bioinformatics, H Lee Moffitt Cancer Center and Research Institute, Tampa, Florida, USA.ORCID 0000-0003-4513-0282
Jasreman DhillonDepartment of Pathology, H Lee Moffitt Cancer Center, Tampa, Florida, USA.
Fengshen KuoUrology Service, Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, New York, USA.ORCID 0000-0003-1797-2896
Abraham Ari HakimiUrology Service, Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, New York, USA.ORCID 0000-0002-0930-8824
Philipp M AltrockDepartment of Evolutionary Theory, Max Planck Institute for Evolutionary Biology, Ploen, Germany.ORCID 0000-0001-7731-3345
James J MuléDepartment of Immunology, H Lee Moffitt Cancer Center and Research Institute, Tampa, Florida, USA.ORCID 0000-0001-7354-0516
Brandon J ManleyDepartment of Genitourinary Oncology, H Lee Moffitt Cancer Center and Research Institute, Tampa, Florida, USA Brandon.Manley@moffitt.org.ORCID 0000-0002-7927-1510
Moffitt Cancer Center · USMemorial Sloan Kettering Cancer Center · USMax Planck Institute for Evolutionary Biology · DEOregon Health & Science University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
TRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI Christine O'Connell · 1998 to 2026
$93.5M
NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA076292
6 · The paper itself

Abstract

introductionIn clear cell renal cell carcinoma (ccRCC), tumor-associated macrophage (TAM) induction of CD8+T cells into a terminally exhausted state has been implicated as a major mechanism of immunotherapy resistance, but a deeper biological understanding is necessary.

methodsPrimary ccRCC tumor samples were obtained from 97 patients between 2004 and 2018. Multiplex immunofluorescence using lymphoid and myeloid markers was performed in seven regions of interest per patient across three predefined zones, and geospatial analysis was performed using Ripley's K analysis, a methodology adapted from ecology.

resultsClustering of CD163+M2 like TAMs into the stromal compartment at the tumor-stroma interface was associated with worse clinical stage (tumor/CD163+nK(75): stage I/II: 4.4 (IQR -0.5 to 5.1); stage III: 1.4 (IQR -0.3 to 3.5); stage IV: 0.6 (IQR -2.1 to 2.1); p=0.04 between stage I/II and stage IV), and worse overall survival (OS) and cancer-specific survival (CSS) (tumor/CD163+nK(75): median OS-hi=149 months, lo=86 months, false-discovery rate (FDR)-adj. Cox p<0.001; median CSS-hi=174 months, lo=85 months; FDR-adj. Cox p<0.001). An RNA-seq differential gene expression score was developed using this geospatial metric, and was externally validated in multiple independent cohorts of patients with ccRCC including: TCGA KIRC, and the IMmotion151, IMmotion150, and JAVELIN Renal 101 clinical trials. In addition, this CD163+ geospatial pattern was found to be associated with a higher TIM-3+ proportion of CD8+T cells, indicative of terminal exhaustion (tumor-core: 0.07 (IQR 0.04-0.14) vs 0.40 (IQR 0.15-0.66), p=0.05).

conclusionsGeospatial clustering of CD163+M2 like TAMs into the stromal compartment at the tumor-stromal interface was associated with poor clinical outcomes and CD8+T cell terminal exhaustion.

Indexed as

Carcinoma, Renal CellKidney NeoplasmsCD8-Positive T-LymphocytesHumansPrognosisTumor MicroenvironmentCD8-Positive T-LymphocytesKidney NeoplasmsMacrophagesTumor Microenvironment

Identifiers

PMID37185232
PMCPMC10151991
OpenAlexW4366992759

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.