Evidence map›Paper›PMID 37184654›Full record

ArticleApplied microbiology and biotechnology2023

Bifunctional and monofunctional α-neoagarooligosaccharide hydrolases from Streptomyces coelicolor A3(2).

Maral Tsevelkhoroloo, Vijayalakshmi Dhakshnamoorthy, Young-Soo Hong, Chang-Ro Lee, Soon-Kwang Hong

Abstract read
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In one paragraph

Article in Applied microbiology and biotechnology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Maral TsevelkhorolooDepartment of Bioscience and Bioinformatics, Myongji University, 116 Myongji-Ro, Yongin, Gyeonggido, 17058, Republic of Korea.
Vijayalakshmi DhakshnamoorthyDepartment of Bioscience and Bioinformatics, Myongji University, 116 Myongji-Ro, Yongin, Gyeonggido, 17058, Republic of Korea.
Young-Soo HongAnticancer Agent Research Center, Korea Research Institute of Bioscience and Biotechnology, 30 Yeongudanji-Ro, Cheongju, Chungbuk, 28116, Republic of Korea.
Chang-Ro LeeDepartment of Bioscience and Bioinformatics, Myongji University, 116 Myongji-Ro, Yongin, Gyeonggido, 17058, Republic of Korea.
Soon-Kwang HongDepartment of Bioscience and Bioinformatics, Myongji University, 116 Myongji-Ro, Yongin, Gyeonggido, 17058, Republic of Korea. skhong@mju.ac.kr.ORCID http://orcid.org/0000-0001-9610-9753
Myongji University · KRKorea Research Institute of Bioscience and Biotechnology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Agar is a galactan and a major component of the red algal cell wall. Agar is metabolized only by specific microorganisms. The final step of the β-agarolytic pathway is mediated by α-neoagarooligosaccharide hydrolase (α-NAOSH), which cleaves neoagarobiose to D-galactose and 3,6-anhydro-α-L-galactose. In the present study, two α-NAOSHs, SCO3481 and SCO3479, were identified in Streptomyces coelicolor A3(2). SCO3481 (370 amino acids, 41.12 kDa) and SCO3479 (995 amino acids, 108.8 kDa) catalyzed the hydrolysis of the α-(1,3) glycosidic bonds of neoagarobiose, neoagarotetraose, and neoagarohexaose at the nonreducing ends, releasing 3,6-anhydro-α-L-galactose. Both were intracellular proteins without any signal peptides for secretion. Similar to all α-NAOSHs reported to date, SCO3481 belonged to the glycosyl hydrolase (GH) 117 family and formed dimers. On the other hand, SCO3479 was a large monomeric α-NAOSH belonging to the GH2 family with a β-galactosidase domain. SCO3479 also clearly showed β-galactosidase activity toward lactose and artificial substrates, but SCO3481 did not. The optimum conditions for α-NAOSH were pH 6.0 and 25 °C for SCO3481, and pH 6.0 and 30 °C for SCO3479. Enzymatic activity was enhanced by Co

Indexed as

Streptomyces coelicolorAgarbeta-GalactosidaseGalactoseGalactosidasesGlycoside HydrolasesAgaralpha-neoagarooligosaccharide hydrolasebeta-GalactosidaseGalactoseGalactosidasesGlycoside HydrolasesSCO3479SCO3481Streptomyces coelicolorα-Neoagarooligosaccharide hydrolaseβ-Galactosidase

Identifiers

PMID37184654
OpenAlexW4376618374

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.