Evidence map›Paper›PMID 37182104›Full record

ArticleiScience2023

Tandem detergent-extraction and immunoprecipitation of proteinopathy: Scalable enrichment of ALS-associated TDP-43 aggregates.

Baggio A Evangelista, Shannon R Cahalan, Joey V Ragusa, Angie Mordant, Julie C Necarsulmer, Robert J Perna, Tejazaditya Ajit, Kristen White, Natalie K Barker, Xu Tian and 4 more

Open access · goldAbstract read
In one paragraph

Article in iScience, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 1 institution in 1 country.

Baggio A EvangelistaDepartment of Cell Biology and Physiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Shannon R CahalanMedical Student Training in Aging Research, Center for Aging and Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Joey V RagusaDepartment of Cell Biology and Physiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Angie MordantProteomics Core Facility, Department of Pharmacology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Julie C NecarsulmerDepartment of Cell Biology and Physiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Robert J PernaDepartment of Neurology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Tejazaditya AjitDepartment of Neurology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Kristen WhiteMicroscopy Services Laboratory, Department of Pathology and Laboratory Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Natalie K BarkerProteomics Core Facility, Department of Pharmacology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Xu TianDepartment of Neurology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Sarah CohenDepartment of Cell Biology and Physiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Rick MeekerDepartment of Neurology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Laura E HerringProteomics Core Facility, Department of Pharmacology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Todd J CohenDepartment of Cell Biology and Physiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
University of North Carolina at Chapel Hill · US

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI David Darr · 1985 to 2026
$201.5M
Dual CHIP Functions Control Tau Triage In Alzheimer's DiseaseR01AG061188 · NIA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI COHEN, TODD JONATHAN, SCHISLER, JONATHAN C. · 2019 to 2023
$3.1M
Molecular mechanisms of intra- and inter-cellular fatty acid traffickingR35GM133460 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Sarah Cohen · 2019 to 2026
$2.9M
Neural network dysfunction in early HIV neuropathogenesisR01NS108808 · NINDS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MEEKER, RICK B · 2018 to 2022
$1.9M
Elucidating The Aberrant TDP-43 Species That Promote NeurodegenerationR01NS105981 · NINDS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI COHEN, TODD JONATHAN · 2018 to 2022
$1.7M
Training Program in Cellular Systems and Integrative PhysiologyT32GM133364 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Kathleen M Caron, Natasha T Snider · 2020 to 2026
$1.4M
UNC-CH Summer Research Training in Aging for Medical StudentsT35AG038047 · NIA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI JAN BUSBY-WHITEHEAD · 2010 to 2026
$1.4M
Dissecting the Role of HDAC6 in Alzheimer's PathogenesisR21AG058080 · NIA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI COHEN, TODD JONATHAN · 2018 to 2019
$428k
A novel mouse model of TDP-43 Proteinopathy in FTLD-ALS: Elucidating the role of TDP-43 acetylation in neurodegeneration and proteostasis impairmentF30AG072786 · NIA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI NECARSULMER, JULIE CHRISTINE · 2021 to 2024
$159k
Investigation of the innate and adaptive immune responses to TDP-43 aggregates in Amyotrophic Lateral SclerosisF31NS122242 · NINDS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI EVANGELISTA, BAGGIO ANGELO · 2022 to 2023
$62k
BLRD VA I01 BX002466NCI NIH HHS P30 CA016086NIA NIH HHS F30 AG072786NIA NIH HHS R01 AG061188NIA NIH HHS R21 AG058080NIA NIH HHS T35 AG038047NIGMS NIH HHS R35 GM133460NIGMS NIH HHS T32 GM133364NINDS NIH HHS F31 NS122242NINDS NIH HHS R01 NS105981NINDS NIH HHS R01 NS108808
6 · The paper itself

Abstract

Transactive response DNA-binding protein of 43 kDa (TDP-43) is a highly conserved, ubiquitously expressed nucleic acid-binding protein that regulates DNA/RNA metabolism. Genetics and neuropathology studies have linked TDP-43 to several neuromuscular and neurological disorders including amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration (FTLD). Under pathological conditions, TDP-43 mislocalizes to the cytoplasm where it forms insoluble, hyper-phosphorylated aggregates during disease progression. Here, we optimized a scalable

Indexed as

BiochemistryBiological sciencesMolecular biologyProteomics

Identifiers

PMID37182104
PMCPMC10173608
OpenAlexW4364378042

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.