Evidence map›Paper›PMID 37181630›Full record

ArticleRSC chemical biology2023

Methylated guanosine and uridine modifications in

Joshua D Jones, Monika K Franco, Tyler J Smith, Laura R Snyder, Anna G Anders, Brandon T Ruotolo, Robert T Kennedy, Kristin S Koutmou

Open access · goldAbstract read
In one paragraph

Article in RSC chemical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Integrating mass spectrometry with Nanopore direct RNA sequencing forbioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. RNase 4 improves bottom-up modification mapping ofbioRxiv : the preprint server for biology · 2026
    Article
  5. Pseudouridylation landscape across 42bioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Conserved 5-methyluridine tRNA modification modulates ribosome translocation.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Joshua D JonesDepartment of Chemistry, University of Michigan, 930 N University Ann Arbor MI 48109 USA kkoutmou@umich.edu +1-734-764-5650.ORCID https://orcid.org/0000-0002-8811-1340
Monika K FrancoProgram in Chemical Biology, University of Michigan, 930 N University Ann Arbor MI 48109 USA.ORCID https://orcid.org/0000-0001-8059-8476
Tyler J SmithDepartment of Chemistry, University of Michigan, 930 N University Ann Arbor MI 48109 USA kkoutmou@umich.edu +1-734-764-5650.ORCID https://orcid.org/0000-0001-8444-6808
Laura R SnyderDepartment of Chemistry, University of Michigan, 930 N University Ann Arbor MI 48109 USA kkoutmou@umich.edu +1-734-764-5650.
Anna G AndersDepartment of Chemistry, University of Michigan, 930 N University Ann Arbor MI 48109 USA kkoutmou@umich.edu +1-734-764-5650.ORCID https://orcid.org/0000-0002-4097-9650
Brandon T RuotoloDepartment of Chemistry, University of Michigan, 930 N University Ann Arbor MI 48109 USA kkoutmou@umich.edu +1-734-764-5650.ORCID https://orcid.org/0000-0002-6084-2328
Robert T KennedyDepartment of Chemistry, University of Michigan, 930 N University Ann Arbor MI 48109 USA kkoutmou@umich.edu +1-734-764-5650.ORCID https://orcid.org/0000-0003-2447-7471
Kristin S KoutmouDepartment of Chemistry, University of Michigan, 930 N University Ann Arbor MI 48109 USA kkoutmou@umich.edu +1-734-764-5650.ORCID https://orcid.org/0000-0002-7763-9262
University of Michigan · US

Funding

Regional Pilot And Feasibility Study Grants ProgramP30DK020572 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Mehboob A Hussain · 2013 to 2026
$24.3M
Mechanisms of translational controlR35GM128836 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Kristin S Koutmou · 2018 to 2026
$3.2M
Cellular Biotechnology Training Program (CBTP) - Years 31-35T32GM145304 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Guizhi Zhu · 2022 to 2026
$2.6M
NIDDK NIH HHS P30 DK020572NIGMS NIH HHS R35 GM128836NIGMS NIH HHS T32 GM145304
6 · The paper itself

Abstract

Chemical modifications to protein encoding messenger RNAs (mRNAs) influence their localization, translation, and stability within cells. Over 15 different types of mRNA modifications have been observed by sequencing and liquid chromatography coupled to tandem mass spectrometry (LC-MS/MS) approaches. While LC-MS/MS is arguably the most essential tool available for studying analogous protein post-translational modifications, the high-throughput discovery and quantitative characterization of mRNA modifications by LC-MS/MS has been hampered by the difficulty of obtaining sufficient quantities of pure mRNA and limited sensitivities for modified nucleosides. We have overcome these challenges by improving the mRNA purification and LC-MS/MS pipelines. The methodologies we developed result in no detectable non-coding RNA modifications signals in our purified mRNA samples, quantify 50 ribonucleosides in a single analysis, and provide the lowest limit of detection reported for ribonucleoside modification LC-MS/MS analyses. These advancements enabled the detection and quantification of 13

Identifiers

PMID37181630
PMCPMC10170649
OpenAlexW4321380370

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.