Evidence map›Paper›PMID 37176003›Full record

SynthesisInternational journal of molecular sciences2023

ROS Consumers or Producers? Interpreting Transcriptomic Data by AlphaFold Modeling Provides Insights into Class III Peroxidase Functions in Response to Biotic and Abiotic Stresses.

James New, Daniel Barsky, Claudia Uhde-Stone

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Advances and opportunities for computational interrogation of plant proteins.The Plant journal : for cell and molecular biology · 2026
    Review
  2. Article
  3. Article
  4. Review of protein structure-based analyses that illuminate plant stress mechanisms.Computational and structural biotechnology journal · 2025
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

James NewDepartment of Biological Sciences, California State University, East Bay, Hayward, CA 94542, USA.
Daniel BarskyDepartment of Physics, California State University, East Bay, Hayward, CA 94542, USA.
Claudia Uhde-StoneDepartment of Biological Sciences, California State University, East Bay, Hayward, CA 94542, USA.ORCID 0000-0001-7357-7650
California State University, East Bay · US

Funding

California State University, East Bay RSCA grant 2022-2023
6 · The paper itself

Abstract

Participating in both biotic and abiotic stress responses, plant-specific class III peroxidases (PERs) show promise as candidates for crop improvement. The multigenic PER family is known to take part in diverse functions, such as lignin formation and defense against pathogens. Traditionally linked to hydrogen peroxide (H

Indexed as

PeroxidaseTranscriptomeGene Expression Regulation, PlantHydrogen PeroxidePeroxidasesPhylogenyReactive Oxygen SpeciesStress, PhysiologicalHydrogen PeroxidePeroxidasePeroxidasesReactive Oxygen SpeciesAlphaFoldArabidopsisclass III peroxidasesphosphate deficiencyplant stress responseROS signaling

Identifiers

PMID37176003
PMCPMC10179425
OpenAlexW4372292022

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.