Evidence map›Paper›PMID 37174599›Full record

ArticleAnimals : an open access journal from MDPI2023

Genomic Characterizations of Porcine Epidemic Diarrhea Viruses (PEDV) in Diarrheic Piglets and Clinically Healthy Adult Pigs from 2019 to 2022 in China.

Binghui Feng, Chen Li, Yuejia Qiu, Wenhao Qi, Ming Qiu, Jixiang Li, Hong Lin, Wanglong Zheng, Jianzhong Zhu, Nanhua Chen

Open access · goldAbstract read
In one paragraph

Article in Animals : an open access journal from MDPI, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Binghui FengCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Chen LiCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.ORCID 0000-0003-2425-6046
Yuejia QiuCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Wenhao QiCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Ming QiuCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Jixiang LiCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Hong LinCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.
Wanglong ZhengCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.ORCID 0000-0002-0939-331X
Jianzhong ZhuCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.ORCID 0000-0002-7082-1993
Nanhua ChenCollege of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China.ORCID 0000-0002-1909-8760
Yangzhou University · CN

Funding

111 Project D18007Applied Basic Research Program of Liaoning Province 2023JH2/10160052National Natural Science Foundation of China 31802172Natural Science Foundation for Excellent Young Scholars of Jiangsu Province BK202111603Open Project Program of Fujian Provincial Key Laboratory for Prevention and Control of Animal Infectious Diseases and Biotechnology ZDSYS2022001Open Project Program of International Research Laboratory of Prevention and Control of Important Animal Infectious Diseases and Zoonotic Diseases of Jiangsu Higher Education Institutions No. 3Open Project Program of Key Laboratory of animal pathogen infection and Immunology of Fujian Province KLAPII202202Priority Academic Program Development of Jiangsu Higher Education Institutions PAPD
6 · The paper itself

Abstract

Porcine epidemic diarrhea virus (PEDV) is a major causative pathogen of diarrheic disease. In this study, the prevalence and evolution of PEDV was evaluated using intestinal samples collected from six provinces of China in 2019-2022. PEDV could not only be detected in diarrheic piglets but also in adult pigs without enteric diseases. The complete genomes of five temporal and geographical representative PEDV strains were determined. Genome-based phylogenetic analysis indicated that XJ1904-700 belongs to the G2-a subgroup, while the other strains are clustered within the S-INDEL subgroup. Recombination analyses supported that JSNJ2004-919 is an inter-subgroup recombinant from SD2014-like (G2-b), CHZ-2013-like (G2-b) and CV777-like (G1-b) isolates, while FJFZ2004-1017 is an intra-subgroup recombinant from XM1-2-like (S-INDEL) and LYG-2014-like (S-INDEL) isolates. Both JSNJ2004-919 and FJFZ2004-1017 were from adult pigs, providing evidence that adult pigs may also serve as the host of PEDV reservoirs for virus evolution. Overall, this study provides new insights into PEDV's prevalence and evolution in both diseased piglets and clinically healthy adult pigs.

Indexed as

adult pigscomplete genomediseased pigletsporcine epidemic diarrhea virusrecombination

Identifiers

PMID37174599
PMCPMC10177568
OpenAlexW4375850298

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.