ArticleScientific data2023
Chromosome-level genome assembly of the spotted alfalfa aphid Therioaphis trifolii.
Article in Scientific data, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed, 13 citations in OpenAlex.
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- A chromosome-level genome assembly of the greenbug, Schizaphis graminum.Scientific data · 2025Article
- Comprehensive Annotation of Olfactory and Gustatory Receptor Genes and Transposable Elements Revealed Their Evolutionary Dynamics in Aphids.Molecular biology and evolution · 2025Article
- Chromosome-level genome assembly of the aphid Megoura crassicauda.Scientific data · 2025Article
- A chromosome-level genome assembly of the aphid Semiaphis heraclei (Takahashi).Scientific data · 2025Article
- A comparative genomic analysis at the chromosomal-level reveals evolutionary patterns of aphid chromosomes.Communications biology · 2025Article
- Chromosome-level genome assembly of soybean aphid.Scientific data · 2025Article
- Chromosome-level genome assembly of Monolepta hieroglyphica, two-spotted leaf beetle (Coleoptera: Chrysomelidae).Scientific data · 2025Article
- Chromosome-level genome assembly of the spotted alfalfa aphid Therioaphis trifolii.Scientific data · 2023Article
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Authors and funding
6 authors at 4 institutions in 2 countries.
Funding
Abstract
The spotted alfalfa aphid (SAA, Therioaphis trifolii) (Hemiptera: Aphididae) is a destructive pest of cultivated alfalfa (Medicago sativa L.) that leads to large financial losses in the livestock industry around the world. Here, we present a chromosome-scale genome assembly of T. trifolii, the first genome assembly for the aphid subfamily Calaphidinae. Using PacBio long-read sequencing, Illumina sequencing, and Hi-C scaffolding techniques, a 541.26 Mb genome was generated, with 90.01% of the assembly anchored into eight scaffolds, and the contig and scaffold N50 are 2.54 Mb and 44.77 Mb, respectively. BUSCO assessment showed a completeness score of 96.6%. A total of 13,684 protein-coding genes were predicted. The high-quality genome assembly of T. trifolii not only provides a genomic resource for the more complete analysis of aphid evolution, but also provides insights into the ecological adaptation and insecticide resistance of T. trifolii.
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