Evidence map›Paper›PMID 37171846›Full record

ArticleMicrobial genomics2023

The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata.

Aitana Neves, Daniel Walther, Trinidad Martin-Campos, Valerie Barbie, Claire Bertelli, Dominique Blanc, Gérard Bouchet, Frédéric Erard, Gilbert Greub, Hans H Hirsch and 17 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbial genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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  18. Genomic Surveillance of Foodborne Pathogens: Advances and Obstacles.Journal of public health management and practice : JPHMP
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Aitana NevesSIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
Daniel WaltherSIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
Trinidad Martin-CamposSIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
Valerie BarbieSIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
Claire BertelliClinical Microbiology, University Hospital Lausanne, Lausanne, Switzerland.
Dominique BlancHospital Epidemiology, University Hospital Lausanne, Lausanne, Switzerland.
Gérard BouchetSIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
Frédéric ErardSIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
Gilbert GreubClinical Microbiology, University Hospital Lausanne, Lausanne, Switzerland.
Hans H HirschClinical Virology, University Hospital Basel, Basel, Switzerland.
Michael HuberInstitute of Medical Virology, University of Zurich, Zurich, Switzerland.
Laurent KaiserVirology, University Hospital Geneva, Geneva, Switzerland.
Stephen L LeibInstitute for Infectious Diseases (IFIK), University of Bern, Bern, Switzerland.
Karoline LeuzingerClinical Virology, University Hospital Basel, Basel, Switzerland.
Vladimir LazarevicGenomic Research Laboratory, University of Geneva, Geneva, Switzerland.
Mirjam MäusezahlFederal Office of Public Health, Bern, Switzerland.
Jorge MolinaSIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
Richard A NeherBiozentrum, University of Basel, Basel, Switzerland.
Vincent PerretenInstitute of Veterinary Bacteriology, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Alban RametteInstitute for Infectious Diseases (IFIK), University of Bern, Bern, Switzerland.
Tim RoloffInstitute of Medical Microbiology, University of Zurich, Zurich, Switzerland.
Jacques SchrenzelGenomic Research Laboratory, University of Geneva, Geneva, Switzerland.
Helena M B Seth-SmithInstitute of Medical Microbiology, University of Zurich, Zurich, Switzerland.
Roger StephanInstitute for Food Safety and Hygiene, Vetsuisse Faculty, University of Zurich, Zurich, Switzerland.
Dillenn TerumalaiSIB Swiss Institute of Bioinformatics, Geneva, Switzerland.
Fanny WegnerInstitute of Medical Microbiology, University of Zurich, Zurich, Switzerland.
Adrian EgliInstitute of Medical Microbiology, University of Zurich, Zurich, Switzerland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Swiss Pathogen Surveillance Platform (SPSP) is a shared secure surveillance platform between human and veterinary medicine, to also include environmental and foodborne isolates. It enables rapid and detailed transmission monitoring and outbreak surveillance of pathogens using whole genome sequencing data and associated metadata. It features controlled data access, complex dynamic queries, dedicated dashboards and automated data sharing with international repositories, providing actionable results for public health and the vision to improve societal well-being and health.

Indexed as

Genome, BacterialOne HealthGenomicsHumansMetadataSwitzerlandantibiotic resistancebacteriabioinformaticsdatabaseepidemiologyfungimolecular surveillanceoutbreaksresearchsequencingtypingvirulencevirus

Identifiers

PMID37171846
PMCPMC10272868

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.