Evidence map›Paper›PMID 37171072›Full record

ArticleJournal of proteome research2023

Deciphering Phenotypes from Protein Biomarkers for Translational Research with PIPER.

Sudhir Putty Reddy, Aileen Y Alontaga, Eric A Welsh, Eric B Haura, Theresa A Boyle, Steven A Eschrich, John M Koomen

Abstract read
In one paragraph

Article in Journal of proteome research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sudhir Putty ReddyMolecular Oncology, Moffitt Cancer Center, Tampa, Florida 33612, United States.
Aileen Y AlontagaPathology, Moffitt Cancer Center, Tampa, Florida 33612, United States.
Eric A WelshBioinformatics and Biostatistics, Moffitt Cancer Center, Tampa, Florida 33612, United States.
Eric B HauraThoracic Oncology, Moffitt Cancer Center, Tampa, Florida 33612, United States.ORCID 0000-0003-3114-1909
Theresa A BoylePathology, Moffitt Cancer Center, Tampa, Florida 33612, United States.
Steven A EschrichBioinformatics and Biostatistics, Moffitt Cancer Center, Tampa, Florida 33612, United States.
John M KoomenMolecular Oncology, Moffitt Cancer Center, Tampa, Florida 33612, United States.ORCID 0000-0002-3818-1762

Funding

TRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI KENNETH Lynn WRIGHT · 1998 to 2026
$93.5M
NCI NIH HHS P30 CA076292
6 · The paper itself

Abstract

Liquid chromatography-multiple reaction monitoring mass spectrometry (LC-MRM) has widespread clinical use for detection of inborn errors of metabolism, therapeutic drug monitoring, and numerous other applications. This technique detects proteolytic peptides as surrogates for protein biomarker expression, mutation, and post-translational modification in individual clinical assays and in cancer research with highly multiplexed quantitation across biological pathways. LC-MRM for protein biomarkers must be translated from multiplexed research-grade panels to clinical use. LC-MRM panels provide the capability to quantify clinical biomarkers and emerging protein markers to establish the context of tumor phenotypes that provide highly relevant supporting information. An application to visualize and communicate targeted proteomics data will empower translational researchers to move protein biomarker panels from discovery to clinical use. Therefore, we have developed a web-based tool for targeted proteomics that provides pathway-level evaluations of key biological drivers (

Indexed as

ProteinsTranslational Research, BiomedicalBiomarkersPeptidesPhenotypeBiomarkersPeptidesProteinspathwayprotein biomarkertargeted proteomicsvisualization software

Identifiers

PMID37171072
PMCPMC11636645

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.