Evidence map›Paper›PMID 37170281›Full record

ArticleCell & bioscience2023

Dual roles of R-loops in the formation and processing of programmed DNA double-strand breaks during meiosis.

Chao Liu, Wei Xu, Liying Wang, Zhuo Yang, Kuan Li, Jun Hu, Yinghong Chen, Ruidan Zhang, Sai Xiao, Wenwen Liu and 4 more

Open access · goldAbstract read
In one paragraph

Article in Cell & bioscience, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 2 countries.

Chao Liu *Guangzhou Women and Children's Medical Center, Guangzhou Medical University, Guangzhou, 510623, China.
Wei Xu *Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, 100084, China.
Liying Wang *Guangzhou Women and Children's Medical Center, Guangzhou Medical University, Guangzhou, 510623, China.
Zhuo Yang *Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, 100084, China.
Kuan Li *Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, 100084, China.
Jun HuState Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing, 210023, China.
Yinghong ChenState Key Laboratory of Stem Cell and Reproductive Biology, Institute of Zoology, Stem Cell and Regenerative Medicine Innovation Institute, Chinese Academy of Sciences, Beijing, 100101, China.
Ruidan ZhangState Key Laboratory of Stem Cell and Reproductive Biology, Institute of Zoology, Stem Cell and Regenerative Medicine Innovation Institute, Chinese Academy of Sciences, Beijing, 100101, China.
Sai XiaoState Key Laboratory of Stem Cell and Reproductive Biology, Institute of Zoology, Stem Cell and Regenerative Medicine Innovation Institute, Chinese Academy of Sciences, Beijing, 100101, China.
Wenwen LiuState Key Laboratory of Stem Cell and Reproductive Biology, Institute of Zoology, Stem Cell and Regenerative Medicine Innovation Institute, Chinese Academy of Sciences, Beijing, 100101, China.
Huafang WeiGuangzhou Women and Children's Medical Center, Guangzhou Medical University, Guangzhou, 510623, China.
Jia-Yu ChenState Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing, 210023, China.
Qianwen SunCenter for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, 100084, China. sunqianwen@mail.tsinghua.edu.cn.
Wei LiGuangzhou Women and Children's Medical Center, Guangzhou Medical University, Guangzhou, 510623, China. leways@gwcmc.org.ORCID http://orcid.org/0000-0002-6235-0749
Chinese Academy of Sciences · CNCenter for Life Sciences · CNGuangzhou Medical University · CNNanjing University · CNAgricultural Genomics Institute at Shenzhen · CNGuangzhou Women and Children Medical Center · CNKing Center · US

Funding

National Key R&D Program of China 2016YFA0500901National Natural Science Foundation of China 32230029National Natural Science Foundation of China 32270898National Natural Science Foundation of China 81925015Plan on enhancing scientific research in GMU Plan on enhancing scientific research in GMUStrategic Priority Research Program of the Chinese Academy of Sciences XDA16020700
6 · The paper itself

Abstract

backgroundMeiotic recombination is initiated by Spo11-dependent programmed DNA double-strand breaks (DSBs) that are preferentially concentrated within genomic regions called hotspots; however, the factor(s) that specify the positions of meiotic DSB hotspots remain unclear.

resultsHere, we examined the frequency and distribution of R-loops, a type of functional chromatin structure comprising single-stranded DNA and a DNA:RNA hybrid, during budding yeast meiosis and found that the R-loops were changed dramatically throughout meiosis. We detected the formation of multiple de novo R-loops in the pachytene stage and found that these R-loops were associated with meiotic recombination during yeast meiosis. We show that transcription-replication head-on collisions could promote R-loop formation during meiotic DNA replication, and these R-loops are associated with Spo11. Furthermore, meiotic recombination hotspots can be eliminated by reversing the direction of transcription or replication, and reversing both of these directions can reconstitute the hotspots.

conclusionsOur study reveals that R-loops may play dual roles in meiotic recombination. In addition to participation in meiotic DSB processing, some meiotic DSB hotspots may be originated from the transcription-replication head-on collisions during meiotic DNA replication.

Indexed as

MeiosisMeiotic DSB hotspotsMeiotic recombinationR-loopsTranscription-replication head-on collisions

Identifiers

PMID37170281
PMCPMC10173651
OpenAlexW4376138525

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.