Evidence map›Paper›PMID 37169961›Full record

ArticleNature chemical biology2023

Signal peptide mimicry primes Sec61 for client-selective inhibition.

Shahid Rehan, Dale Tranter, Phillip P Sharp, Gregory B Craven, Eric Lowe, Janet L Anderl, Tony Muchamuel, Vahid Abrishami, Suvi Kuivanen, Nicole A Wenzell and 11 more

Open access · hybridAbstract read
In one paragraph

Article in Nature chemical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Lipid Scrambling Pathways in the Sec61 Translocon Complex.Journal of the American Chemical Society · 2025
    Article
  8. Cotranslational membrane insertion of the voltage-sensitive KProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Review
  10. Article
  11. A unifying model for membrane protein biogenesis.Nature structural & molecular biology · 2024
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Editorial: The evolving picture of CaFrontiers in physiology · 2023
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 3 institutions in 3 countries.

Shahid RehanInstitute of Biotechnology, HiLIFE, University of Helsinki, Helsinki, Finland.
Dale TranterInstitute of Biotechnology, HiLIFE, University of Helsinki, Helsinki, Finland.
Phillip P SharpDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA, USA.ORCID 0000-0003-4416-2303
Gregory B CravenDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA, USA.ORCID 0000-0003-3414-8348
Eric LoweKezar Life Sciences, South San Francisco, CA, USA.
Janet L AnderlKezar Life Sciences, South San Francisco, CA, USA.
Tony MuchamuelKezar Life Sciences, South San Francisco, CA, USA.
Vahid AbrishamiInstitute of Biotechnology, HiLIFE, University of Helsinki, Helsinki, Finland.ORCID 0000-0002-3772-7663
Suvi KuivanenInstitute of Virology, Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany.
Nicole A WenzellDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA, USA.
Andy JenningsKezar Life Sciences, South San Francisco, CA, USA.
Chakrapani KalyanaramanDepartment of Pharmaceutical Chemistry, Faculty of Pharmacy, University of California, San Francisco, CA, USA.
Tomas StrandinDepartment of Virology, Faculty of Medicine, University of Helsinki, Helsinki, Finland.
Matti JavanainenInstitute of Biotechnology, HiLIFE, University of Helsinki, Helsinki, Finland.ORCID 0000-0003-4858-364X
Olli VapalahtiDepartment of Virology, Faculty of Medicine, University of Helsinki, Helsinki, Finland.ORCID 0000-0003-2270-6824
Matthew P JacobsonDepartment of Pharmaceutical Chemistry, Faculty of Pharmacy, University of California, San Francisco, CA, USA.ORCID 0000-0001-6262-655X
Dustin McMinnKezar Life Sciences, South San Francisco, CA, USA.
Christopher J KirkKezar Life Sciences, South San Francisco, CA, USA.
Juha T HuiskonenInstitute of Biotechnology, HiLIFE, University of Helsinki, Helsinki, Finland.ORCID 0000-0002-0348-7323
Jack TauntonDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA, USA. jack.taunton@ucsf.edu.ORCID 0000-0002-9627-5898
Ville O PaavilainenInstitute of Biotechnology, HiLIFE, University of Helsinki, Helsinki, Finland. ville.paavilainen@helsinki.fi.ORCID 0000-0002-3160-7767
University of Helsinki · FIUniversity of California, San Francisco · USHumboldt-Universität zu Berlin · DE

Funding

ChimeraX -- Next Generation Visualization and Analysis Software for Multiscale ModelingR01GM129325 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2018 to 2025
$5.2M
Research Training in Chemistry and Chemical BiologyT32GM145460 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jason E Gestwicki · 2022 to 2026
$3.1M
NIGMS NIH HHS R01 GM129325NIGMS NIH HHS T32 GM145460
6 · The paper itself

Abstract

Preventing the biogenesis of disease-relevant proteins is an attractive therapeutic strategy, but attempts to target essential protein biogenesis factors have been hampered by excessive toxicity. Here we describe KZR-8445, a cyclic depsipeptide that targets the Sec61 translocon and selectively disrupts secretory and membrane protein biogenesis in a signal peptide-dependent manner. KZR-8445 potently inhibits the secretion of pro-inflammatory cytokines in primary immune cells and is highly efficacious in a mouse model of rheumatoid arthritis. A cryogenic electron microscopy structure reveals that KZR-8445 occupies the fully opened Se61 lateral gate and blocks access to the lumenal plug domain. KZR-8445 binding stabilizes the lateral gate helices in a manner that traps select signal peptides in the Sec61 channel and prevents their movement into the lipid bilayer. Our results establish a framework for the structure-guided discovery of novel therapeutics that selectively modulate Sec61-mediated protein biogenesis.

Indexed as

Membrane ProteinsProtein Sorting SignalsAnimalsMiceProtein BiosynthesisProtein TransportSEC Translocation ChannelsMembrane ProteinsProtein Sorting SignalsSEC Translocation Channels

Identifiers

PMID37169961
PMCPMC10449633
OpenAlexW4376134511

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.