Evidence map›Paper›PMID 37169959›Full record

ArticleNature chemical biology2023

A common mechanism of Sec61 translocon inhibition by small molecules.

Samuel Itskanov, Laurie Wang, Tina Junne, Rumi Sherriff, Li Xiao, Nicolas Blanchard, Wei Q Shi, Craig Forsyth, Dominic Hoepfner, Martin Spiess and 1 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
10.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
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  8. Buruli ulcer.Nature reviews. Disease primers · 2025
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Lipid Scrambling Pathways in the Sec61 Translocon Complex.Journal of the American Chemical Society · 2025
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 3 countries.

Samuel Itskanov *Biophysics Graduate Program, University of California, Berkeley, Berkeley, CA, USA.ORCID 0000-0003-0705-2359
Laurie Wang *Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.ORCID 0000-0003-0199-8346
Tina JunneBiozentrum, University of Basel, Basel, Switzerland.
Rumi SherriffDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.ORCID 0000-0002-7210-7777
Li XiaoDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH, USA.
Nicolas BlanchardUniversité de Haute-Alsace, Université de Strasbourg, CNRS, LIMA, UMR 7042, Mulhouse, France.ORCID 0000-0002-3097-0548
Wei Q ShiDepartment of Chemistry, Ball State University, Muncie, IN, USA.ORCID 0000-0001-5453-1753
Craig ForsythDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH, USA.
Dominic HoepfnerNovartis Institutes for BioMedical Research, Novartis Pharma AG, Forum 1 Novartis Campus, Basel, Switzerland.ORCID 0000-0001-8450-7543
Martin SpiessBiozentrum, University of Basel, Basel, Switzerland.ORCID 0000-0001-7139-0550
Eunyong ParkDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA. eunyong_park@berkeley.edu.ORCID 0000-0003-2994-5174
University of California, Berkeley · USThe Ohio State University · USUniversity of Basel · CHBall State University · USCentre National de la Recherche Scientifique · FRNovartis (Switzerland) · CHQB3 · US

Funding

MOLECULAR BIOPHYSICS TRAINING GRANTT32GM008295 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HURLEY, JAMES H, WEMMER, DAVID E · 1989 to 2022
$8.1M
Medicinal Chemistry and Chemical Proteomics of Ipomoeassin Natural GlycoresinsR15GM116032 · NIGMS · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI SHI, WEI · 2015 to 2020
$767k
NIGMS NIH HHS R15 GM116032NIGMS NIH HHS T32 GM008295
6 · The paper itself

Abstract

The Sec61 complex forms a protein-conducting channel in the endoplasmic reticulum membrane that is required for secretion of soluble proteins and production of many membrane proteins. Several natural and synthetic small molecules specifically inhibit Sec61, generating cellular effects that are useful for therapeutic purposes, but their inhibitory mechanisms remain unclear. Here we present near-atomic-resolution structures of human Sec61 inhibited by a comprehensive panel of structurally distinct small molecules-cotransin, decatransin, apratoxin, ipomoeassin, mycolactone, cyclotriazadisulfonamide and eeyarestatin. All inhibitors bind to a common lipid-exposed pocket formed by the partially open lateral gate and plug domain of Sec61. Mutations conferring resistance to the inhibitors are clustered at this binding pocket. The structures indicate that Sec61 inhibitors stabilize the plug domain in a closed state, thereby preventing the protein-translocation pore from opening. Our study provides the atomic details of Sec61-inhibitor interactions and the structural framework for further pharmacological studies and drug design.

Indexed as

Endoplasmic ReticulumMembrane ProteinsDepsipeptidesHumansMacrolidesPeptides, CyclicProtein TransportSEC Translocation ChannelsSulfonamidesTriazolescotransincyclotriazadisulfonamidedecatransinDepsipeptidesMacrolidesMembrane ProteinsmycolactonePeptides, CyclicSEC Translocation ChannelsSulfonamidesTriazoles

Identifiers

PMID37169959
PMCPMC11458068
OpenAlexW4376134533

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.