ArticleNature food2023
Multi-omics resources for targeted agronomic improvement of pigmented rice.
Article in Nature food, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- Nutritional Components and Bioactive Substances of Colored Rice: From Molecular Formation, Nutritional and Health Benefits to Industrial Application Prospects.Molecules (Basel, Switzerland) · 2026Review
- Regulatory Roles of PURPLE FRUIT 1 and OsPa in Pigmentation of Rice Grain.Rice (New York, N.Y.) · 2026Article
- Integrative multi-omics analysis reveals the domestication mechanism of black rice.National science review · 2026Article
- OrchidMD: An Integrated and User-Interactive Orchid Multi-Omics Database for Mining Genes and Biological Research.Plant biotechnology journal · 2026Article
- Article
- Advances in plant metabolic engineering through synthetic biology.Frontiers in plant science · 2026Review
- Rice Bran Supplements the Nutritional Density of Ready-to-Use Therapeutic Foods: A Targeted Nutrient and Non-Targeted Metabolomic Analysis.Food science & nutrition · 2026Article
- Genetic diversity and evolution of rice centromeres.Nature genetics · 2025Article
- Next-generation translational genomics for developing future crops.Functional & integrative genomics · 2025Review
- Harnessing genetic diversity in wheat to enhance grain nutrition and yield for biofortification breeding.Biological research · 2025Article
- Harnessing neo-domestication of wild pigmented rice for enhanced nutrition and sustainable agriculture.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Review
- Composition and Biological Activity of Colored Rice-A Comprehensive Review.Foods (Basel, Switzerland) · 2025Review
- Rice Bran Extraction and Stabilization Methods for Nutrient and Phytochemical Biofortification, Nutraceutical Development, and Dietary Supplementation.Nutrition reviews · 2025Review
- Advances and Future Prospects of Pigment Deposition in Pigmented Rice.Plants (Basel, Switzerland) · 2025Review
- Comprehensive genetic diversity revealed in the pre-breeding RILs (Frontiers in genetics · 2025Article
- A cooking and eating quality evaluating system for whole grain black rice.Molecular breeding : new strategies in plant improvement · 2025Article
- Structural and functional characterization of cellulose synthase proteins (CesA) in rice and their regulation via brassinosteroid signaling under arsenate stress.Plant cell reports · 2024Article
- Biomarkers of the main nutritional components in purple rice during five successive grain filling stages.Food chemistry: X · 2024Article
- Crop bioengineering via gene editing: reshaping the future of agriculture.Plant cell reports · 2024Review
- Functional nutritional rice: current progresses and future prospects.Frontiers in plant science · 2024Review
Corrections and comments
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Authors and funding
14 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Pigmented rice (Oryza sativa L.) is a rich source of nutrients, but pigmented lines typically have long life cycles and limited productivity. Here we generated genome assemblies of 5 pigmented rice varieties and evaluated the genetic variation among 51 pigmented rice varieties by resequencing an additional 46 varieties. Phylogenetic analyses divided the pigmented varieties into four varietal groups: Geng-japonica, Xian-indica, circum-Aus and circum-Basmati. Metabolomics and ionomics profiling revealed that black rice varieties are rich in aromatic secondary metabolites. We established a regeneration and transformation system and used CRISPR-Cas9 to knock out three flowering time repressors (Hd2, Hd4 and Hd5) in the black Indonesian rice Cempo Ireng, resulting in an early maturing variety with shorter stature. Our study thus provides a multi-omics resource for understanding and improving Asian pigmented rice.
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