Evidence map›Paper›PMID 37169801›Full record

ArticleNature communications2023

Replication fork binding triggers structural changes in the PriA helicase that govern DNA replication restart in E. coli.

Alexander T Duckworth, Peter L Ducos, Sarah D McMillan, Kenneth A Satyshur, Katelien H Blumenthal, Haley R Deorio, Joseph A Larson, Steven J Sandler, Timothy Grant, James L Keck

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. A superfamily 1 helicase translocates on double-stranded DNA.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Geometry of Braided DNA Dictates Supercoiling Partition.bioRxiv : the preprint server for biology · 2024
    Article
  11. Article
  12. Hachiman is a genome integrity sensor.bioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Alexander T DuckworthDepartment of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA.ORCID 0000-0002-7713-4117
Peter L Ducos *Department of Biochemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA.ORCID 0000-0002-9172-1238
Sarah D McMillan *Department of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA.ORCID 0009-0005-8378-5177
Kenneth A SatyshurDepartment of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA.ORCID 0000-0001-9371-2493
Katelien H BlumenthalDepartment of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Haley R DeorioDepartment of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA.ORCID 0000-0003-1364-027X
Joseph A LarsonDepartment of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA.ORCID 0009-0005-8345-3607
Steven J SandlerDepartment of Microbiology, University of Massachusetts at Amherst, Amherst, MA, 01003, USA. sandler@microbio.umass.edu.ORCID 0000-0003-2994-1552
Timothy GrantDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA. tim.grant@wisc.edu.ORCID 0000-0002-4855-8703
James L KeckDepartment of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA. jlkeck@wisc.edu.ORCID 0000-0002-5961-0220
University of Wisconsin–Madison · USUniversity of Massachusetts Amherst · US

Funding

BIOTECHNOLOGY TRAINING PROGRAMT32GM008349 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOX, BRIAN G · 1989 to 2019
$22.5M
Biotechnology Training ProgramT32GM135066 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI SCOTT M. COYLE, BRIAN G FOX · 2020 to 2026
$7.0M
Structure and Function of the Bacterial PrimosomeR01GM098885 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI James L Keck · 2012 to 2026
$4.0M
NIGMS NIH HHS R01 GM098885NIGMS NIH HHS T32 GM008349NIGMS NIH HHS T32 GM135066
6 · The paper itself

Abstract

Bacterial replisomes often dissociate from replication forks before chromosomal replication is complete. To avoid the lethal consequences of such situations, bacteria have evolved replication restart pathways that reload replisomes onto prematurely terminated replication forks. To understand how the primary replication restart pathway in E. coli (PriA-PriB) selectively acts on replication forks, we determined the cryogenic-electron microscopy structure of a PriA/PriB/replication fork complex. Replication fork specificity arises from extensive PriA interactions with each arm of the branched DNA. These interactions reshape the PriA protein to create a pore encircling single-stranded lagging-strand DNA while also exposing a surface of PriA onto which PriB docks. Together with supporting biochemical and genetic studies, the structure reveals a switch-like mechanism for replication restart initiation in which restructuring of PriA directly couples replication fork recognition to PriA/PriB complex formation to ensure robust and high-fidelity replication re-initiation.

Indexed as

Escherichia coliEscherichia coli ProteinsDNADNA, BacterialDNA-Binding ProteinsDNA HelicasesDNA ReplicationDNA, Single-StrandedDNADNA, BacterialDNA-Binding ProteinsDNA HelicasesDNA, Single-StrandedEscherichia coli ProteinspriA protein, E coliPriB protein, E coli

Identifiers

PMID37169801
PMCPMC10175261
OpenAlexW4376134439

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.