Evidence map›Paper›PMID 37169791›Full record

ArticleScientific data2023

An annotated human blastocyst dataset to benchmark deep learning architectures for in vitro fertilization.

Florian Kromp, Raphael Wagner, Basak Balaban, Véronique Cottin, Irene Cuevas-Saiz, Clara Schachner, Peter Fancsovits, Mohamed Fawzy, Lukas Fischer, Necati Findikli and 7 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Florian Kromp *Software Competence Center Hagenberg, Data Science, Hagenberg, Austria. florian.kromp@scch.at.ORCID 0000-0003-4557-5652
Raphael Wagner *Software Competence Center Hagenberg, Data Science, Hagenberg, Austria.
Basak BalabanAmerican Hospital of Istanbul, In vitro fertilization lab, Istanbul, Turkey.
Véronique CottinViollier AG, Assisted Reproduction Technologies, Basel, Switzerland.
Irene Cuevas-SaizHospital General Universitario de Valencia, In vitro fertilization lab, Valencia, Spain.
Clara SchachnerSoftware Competence Center Hagenberg, Data Science, Hagenberg, Austria.
Peter FancsovitsSemmelweis University, Department of Obstetrics and Gynecology, Division of Assisted Reproduction, Budapest, Hungary.
Mohamed FawzyIbnSina and Banon IVF Centers, In vitro fertilization lab, Sohag, Egypt.
Lukas FischerSoftware Competence Center Hagenberg, Data Science, Hagenberg, Austria.ORCID 0000-0001-5303-6638
Necati FindikliBahceci Fulya IVF Centre Istanbul, In vitro fertilization lab, Istanbul, Turkey.
Borut KovačičUniversity Medical Centre Maribor, Department of Reproductive Medicine and Gynecological Endocrinology, Maribor, Slovenia.
Dejan LjiljakSestre Milosrdnice University Hospital Center, Department of Gynecology and Obstetrics, Zagreb, Croatia.
Iris Martínez-RoderoUniversitat Autònoma de Barcelona, Laboratori de Fecundació In Vitro, Barcelona, Spain.
Lodovico ParmegianiNext Fertility GynePro - NextClinic International, Bologna, Italy.
Omar SheblKepler University Linz, Department of Gynecology, Obstetrics and Gynecological Endocrinology, Linz, Austria.
Xie MinUniversity Hospital Zurich, Department of Reproductive Endocrinology, Zurich, Switzerland.
Thomas EbnerKepler University Linz, Department of Gynecology, Obstetrics and Gynecological Endocrinology, Linz, Austria.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Medical Assisted Reproduction proved its efficacy to treat the vast majority forms of infertility. One of the key procedures in this treatment is the selection and transfer of the embryo with the highest developmental potential. To assess this potential, clinical embryologists routinely work with static images (morphological assessment) or short video sequences (time-lapse annotation). Recently, Artificial Intelligence models were utilized to support the embryo selection procedure. Even though they have proven their great potential in different in vitro fertilization settings, there is still considerable room for improvement. To support the advancement of algorithms in this research field, we built a dataset consisting of static blastocyst images and additional annotations. As such, Gardner criteria annotations, depicting a morphological blastocyst rating scheme, and collected clinical parameters are provided. The presented dataset is intended to be used to train deep learning models on static morphological images to predict Gardner's criteria and clinical outcomes such as live birth. A benchmark of human expert's performance in annotating Gardner criteria is provided.

Indexed as

Artificial IntelligenceBlastocystFertilization in VitroBenchmarkingDeep LearningFemaleHumansPregnancy

Identifiers

PMID37169791
PMCPMC10175281

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.