Evidence map›Paper›PMID 37169593›Full record

ArticleLife science alliance2023

Predictive data-driven modeling of C-terminal tyrosine function in the EGFR signaling network.

Jacqueline S Gerritsen, Joseph S Faraguna, Rudy Bonavia, Frank B Furnari, Forest M White

Open access · goldAbstract read
In one paragraph

Article in Life science alliance, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Emergent eukaryotic directional sensing via receptor degradation and diffusion.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Jacqueline S GerritsenDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.
Joseph S FaragunaDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.
Rudy BonaviaLudwig Institute for Cancer Research, La Jolla, CA, USA.
Frank B FurnariLudwig Institute for Cancer Research, La Jolla, CA, USA.ORCID https://orcid.org/0000-0003-1909-4361
Forest M WhiteDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA fwhite@mit.edu.ORCID https://orcid.org/0000-0002-1545-1651
Massachusetts Institute of Technology · USLudwig Cancer Research · USUniversity of California San Diego · US

Funding

VIRUS PRODUCTION COREP30CA014051 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Paula T Hammond · 1985 to 2026
$93.9M
Trans Network ProjectU54CA210180 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SARKARIA, JANN N., WHITE, FOREST M · 2016 to 2020
$10.2M
Identification of adaptive response mechanisms in breast cancer by information theory and proteomicsU01CA238720 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI KRAVCHENKO-BALASHA, NATALY, WHITE, FOREST M · 2019 to 2023
$2.0M
Promoting Receptor Protein Tyrosine Phosphatase Activity by TargetingTransmembrane Domain InteractionsR01GM139998 · NIGMS · LEHIGH UNIVERSITY · PI LAZZARA, MATTHEW J, THEVENIN, DAMIEN · 2020 to 2023
$1.7M
NCI NIH HHS P30 CA014051NCI NIH HHS U01 CA238720NCI NIH HHS U54 CA210180NIGMS NIH HHS R01 GM139998
6 · The paper itself

Abstract

The epidermal growth factor receptor (EGFR) has been studied extensively because of its critical role in cellular signaling and association with disease. Previous models have elucidated interactions between EGFR and downstream adaptor proteins or showed phenotypes affected by EGFR. However, the link between specific EGFR phosphorylation sites and phenotypic outcomes is still poorly understood. Here, we employed a suite of isogenic cell lines expressing site-specific mutations at each of the EGFR C-terminal phosphorylation sites to interrogate their role in the signaling network and cell biological response to stimulation. Our results demonstrate the resilience of the EGFR network, which was largely similar even in the context of multiple Y-to-F mutations in the EGFR C-terminal tail, while also revealing nodes in the network that have not previously been linked to EGFR signaling. Our data-driven model highlights the signaling network nodes associated with distinct EGF-driven cell responses, including migration, proliferation, and receptor trafficking. Application of this same approach to less-studied RTKs should provide a plethora of novel associations that should lead to an improved understanding of these signaling networks.

Indexed as

Epidermal Growth FactorTyrosineErbB ReceptorsPhosphorylationSignal TransductionEpidermal Growth FactorErbB ReceptorsTyrosine

Identifiers

PMID37169593
PMCPMC10176108
OpenAlexW4376128441

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.