Evidence map›Paper›PMID 37167569›Full record

ArticleBiochemistry2023

Orthogonal Versatile Interacting Peptide Tags for Imaging Cellular Proteins.

Alexa Suyama, Kaylyn L Devlin, Miguel Macias-Contreras, Julia K Doh, Ujwal Shinde, Kimberly E Beatty

Open access · hybridAbstract read
In one paragraph

Article in Biochemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Alexa SuyamaDepartment of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, Oregon 97239, United States.
Kaylyn L DevlinDepartment of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, Oregon 97239, United States.
Miguel Macias-ContrerasDepartment of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, Oregon 97239, United States.
Julia K DohDepartment of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, Oregon 97239, United States.ORCID 0000-0001-9375-6947
Ujwal ShindeDepartment of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, Oregon 97239, United States.
Kimberly E BeattyDepartment of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, Oregon 97239, United States.ORCID 0000-0002-2303-8779
Oregon Health & Science University · US

Funding

New Technology for Tracking Proteins by Light and Electron MicroscopyR01GM122854 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI BEATTY, KIMBERLY ELIZABETH · 2017 to 2021
$2.1M
NIGMS NIH HHS R01 GM122854
6 · The paper itself

Abstract

Genetic tags are transformative tools for investigating the function, localization, and interactions of cellular proteins. Most studies today are reliant on selective labeling of more than one protein to obtain comprehensive information on a protein's behavior in situ. Some proteins can be analyzed by fusion to a protein tag, such as green fluorescent protein, HaloTag, or SNAP-Tag. Other proteins benefit from labeling via small peptide tags, such as the recently reported versatile interacting peptide (VIP) tags. VIP tags enable observations of protein localization and trafficking with bright fluorophores or nanoparticles. Here, we expand the VIP toolkit by presenting two new tags: TinyVIPER and PunyVIPER. These two tags were designed for use with MiniVIPER for labeling up to three distinct proteins at once in cells. Labeling is mediated by the formation of a high-affinity, biocompatible heterodimeric coiled coil. Each tag was validated by fluorescence microscopy, including observation of transferrin receptor 1 trafficking in live cells. We verified that labeling via each tag is highly specific for one- or two-color imaging. Last, the self-sorting tags were used for simultaneous labeling of three protein targets (i.e., TOMM20, histone 2B, and actin) in fixed cells, highlighting their utility for multicolor microscopy. MiniVIPER, TinyVIPER, and PunyVIPER are small and robust peptide tags for selective labeling of cellular proteins.

Indexed as

Fluorescent DyesPeptidesGreen Fluorescent ProteinsHistonesMicroscopy, FluorescenceStaining and LabelingFluorescent DyesGreen Fluorescent ProteinsHistonesPeptides

Identifiers

PMID37167569
PMCPMC10249344
OpenAlexW4376225401

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.