Evidence map›Paper›PMID 37167324›Full record

ArticlePloS one2023

Expression and secretion of glycosylated barley oxalate oxidase in Pichia pastoris.

William Donelan, ShiWu Li, Paul R Dominguez-Gutierrez, Augustus Anderson Iv, Li-Jun Yang, Cuong Nguyen, Benjamin K Canales

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

William DonelanDepartment of Urology, College of Medicine, University of Florida, Gainesville, Florida, United States of America.ORCID 0000-0001-7742-8089
ShiWu LiDepartment of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida, Gainesville, Florida, United States of America.
Paul R Dominguez-GutierrezDepartment of Urology, College of Medicine, University of Florida, Gainesville, Florida, United States of America.ORCID 0000-0002-5414-6895
Augustus Anderson IvDepartment of Urology, College of Medicine, University of Florida, Gainesville, Florida, United States of America.
Li-Jun YangDepartment of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida, Gainesville, Florida, United States of America.
Cuong NguyenDepartment of Infectious Diseases and Immunology, College of Veterinary Medicine, University of Florida, Gainesville, Florida, United States of America.ORCID 0000-0001-5633-4075
Benjamin K CanalesDepartment of Urology, College of Medicine, University of Florida, Gainesville, Florida, United States of America.ORCID 0000-0002-9571-8394
University of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oxalate oxidase is an enzyme that degrades oxalate and is used in commercial urinary assays to measure oxalate levels. The objective of this study was to establish an enhanced expression system for secretion and purification of oxalate oxidase using Pichia pastoris. A codon optimized synthetic oxalate oxidase gene derived from Hordeum vulgare (barley) was generated and cloned into the pPICZα expression vector downstream of the N-terminal alpha factor secretion signal peptide sequence and used for expression in P. pastoris X-33 strain. A novel chimeric signal peptide consisting of the pre-OST1 sequence fused to pro-αpp8 containing several amino acid substitutions was also generated to enhance secretion. Active enzyme was purified to greater than 90% purity using Q-Sepharose anion exchange chromatography. The purified oxalate oxidase enzyme had an estimated Km value of 256μM, and activity was determined to be 10U/mg. We have developed an enhanced oxalate oxidase expression system and method for purification.

Indexed as

HordeumOxalatesOxidoreductasesPichiaProtein Sorting SignalsRecombinant ProteinsSaccharomycetalesoxalate oxidaseOxalatesOxidoreductasesProtein Sorting SignalsRecombinant Proteins

Identifiers

PMID37167324
PMCPMC10174515
OpenAlexW4376129332

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.