Evidence map›Paper›PMID 37166674›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

Evolution of Cell-Type-Specific RNA Aptamers via Live Cell-Based SELEX.

Alberto Herrera, Jiehua Zhou, Min-Sun Song, John J Rossi

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Alberto HerreraCenter for RNA Biology and Therapeutics, Beckman Research Institute of City of Hope, Duarte, CA, USA.
Jiehua ZhouHitGen Inc., Chengdu, China.
Min-Sun SongCenter for RNA Biology and Therapeutics, Beckman Research Institute of City of Hope, Duarte, CA, USA. msong@coh.org.
John J RossiCenter for RNA Biology and Therapeutics, Beckman Research Institute of City of Hope, Duarte, CA, USA. jrossi@coh.org.
City of Hope · USBeckman Research Institute

Funding

Develop novel inhaled neutralizing RNA therapeutics against COVID-19R21AI161075 · NIAID · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI ROSSI, JOHN JOSEPH · 2021 to 2021
$396k
NIAID NIH HHS R21 AI161075
6 · The paper itself

Abstract

Live cell-based SELEX (Systematic Evolution of Ligand EXponential enrichment) is a promising approach for identifying aptamers that can selectively bind to a cell-surface receptor or recognize a particular target cell population. In particular, it offers a facile selection strategy for some special cell-surface proteins that are originally glycosylated or heavily posttranslationally modified and are unavailable in their native/active conformation after in vitro expression and purification. In this chapter, we describe a generalized procedure for evolution of cell type-specific RNA aptamers targeting a cell membrane bound target by combining the live cell-based SELEX strategy with high-throughput sequencing (HTS) and bioinformatics analysis.

Indexed as

Aptamers, NucleotideComputational BiologyHigh-Throughput Nucleotide SequencingLigandsSELEX Aptamer TechniqueAptamers, NucleotideLigandsCell-type-specific RNA aptamerHigh-throughput sequencing (HTS)Live cell-based SELEX

Identifiers

PMID37166674
OpenAlexW4376132563

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.