Evidence map›Paper›PMID 37166661›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

In Vivo Cross-Linking and Co-Immunoprecipitation Procedure to Analyze Nuclear tRNA Export Complexes in Yeast Cells.

Kunal Chatterjee, Anita K Hopper

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 87% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 0 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Kunal ChatterjeeDepartment of Molecular Genetics, Center for RNA Biology, The Ohio State University, Columbus, OH, USA. chatterjeek@wittenberg.edu.
Anita K HopperDepartment of Molecular Genetics, Center for RNA Biology, The Ohio State University, Columbus, OH, USA. hopper.64@osu.edu.
The Ohio State University · USWittenberg University · US

Funding

tRNA processing and nuclear-cytoplasmic dynamicsR01GM122884 · NIGMS · OHIO STATE UNIVERSITY · PI HOPPER, ANITA K · 2017 to 2024
$2.7M
NIGMS NIH HHS R01 GM122884
6 · The paper itself

Abstract

tRNAs are small noncoding RNAs that are predominantly known for their roles in protein synthesis and also participate in numerous other functions ranging from retroviral replication to apoptosis. In eukaryotic cells, all tRNAs move bidirectionally, shuttling between the nucleus and the cytoplasm. Bidirectional nuclear-cytoplasmic tRNA trafficking requires a complex set of conserved proteins. Here, we describe an in vivo biochemical methodology in Saccharomyces cerevisiae to assess the ability of proteins implicated in tRNA nuclear export to form nuclear export complexes with tRNAs. This method employs tagged putative tRNA nuclear exporter proteins and co-immunoprecipitation of tRNA-exporter complexes using antibody-conjugated magnetic beads. Because the interaction between nuclear exporters and tRNAs may be transient, this methodology employs strategies to effectively trap tRNA-protein complexes in vivo. This pull-down method can be used to verify and characterize candidate proteins and their potential interactors implicated in tRNA nuclear-cytoplasmic trafficking.

Indexed as

Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsActive Transport, Cell NucleusCell NucleusNuclear ProteinsNucleocytoplasmic Transport ProteinsRNA, TransferNuclear ProteinsNucleocytoplasmic Transport ProteinsRNA, TransferSaccharomyces cerevisiae ProteinsCo-immunoprecipitationFormaldehyde-cross-linkingPrimary tRNA nuclear exportRT-PCRRT-qPCRtRNA nuclear re-exporttRNA retrograde nuclear importWestern blot

Identifiers

PMID37166661
PMCPMC10370246
OpenAlexW4376132923

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.