Evidence map›Paper›PMID 37165349›Full record

ArticleBMC medical informatics and decision making2023

2.5D MFFAU-Net: a convolutional neural network for kidney segmentation.

Peng Sun, Zengnan Mo, Fangrong Hu, Xin Song, Taiping Mo, Bonan Yu, Yewei Zhang, Zhencheng Chen

Open access · goldAbstract read
In one paragraph

Article in BMC medical informatics and decision making, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Peng SunSchool of Electronic Engineering and Automation, Guilin University of Electronic Technology, Guilin, 541004, Guangxi, China.
Zengnan MoCenter for Genomic and Personalized Medicine, Guangxi Medical University, Nanning, 530021, Guangxi, China.
Fangrong HuSchool of Electronic Engineering and Automation, Guilin University of Electronic Technology, Guilin, 541004, Guangxi, China.
Xin SongSchool of Electronic Engineering and Automation, Guilin University of Electronic Technology, Guilin, 541004, Guangxi, China.
Taiping MoSchool of Electronic Engineering and Automation, Guilin University of Electronic Technology, Guilin, 541004, Guangxi, China.
Bonan YuSchool of Architecture and Transportation Engineering, Guilin University of Electronic Technology, Guilin, 541004, Guangxi, China. xsyubonan@163.com.
Yewei ZhangHepatopancreatobiliary Center, The Second Affiliated Hospital of Nanjing Medical University, Nanjing, China.
Zhencheng ChenSchool of Electronic Engineering and Automation, Guilin University of Electronic Technology, Guilin, 541004, Guangxi, China. zhenchchen@163.com.
Guilin University of Electronic Technology · CNGuangxi Medical University · CNGuilin University of Technology · CNSecond Affiliated Hospital of Nanjing Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundKidney tumors have become increasingly prevalent among adults and are now considered one of the most common types of tumors. Accurate segmentation of kidney tumors can help physicians assess tumor complexity and aggressiveness before surgery. However, segmenting kidney tumors manually can be difficult because of their heterogeneity.

methodsThis paper proposes a 2.5D MFFAU-Net (multi-level Feature Fusion Attention U-Net) to segment kidneys, tumors and cysts. First, we propose a 2.5D model for learning to combine and represent a given slice in 2D slices, thereby introducing 3D information to balance memory consumption and model complexity. Then, we propose a ResConv architecture in MFFAU-Net and use the high-level and low-level feature in the model. Finally, we use multi-level information to analyze the spatial features between slices to segment kidneys and tumors.

resultsThe 2.5D MFFAU-Net was evaluated on KiTS19 and KiTS21 kidney datasets and demonstrated an average dice score of 0.924 and 0.875, respectively, and an average Surface dice (SD) score of 0.794 in KiTS21.

conclusionThe 2.5D MFFAU-Net model can effectively segment kidney tumors, and the results are comparable to those obtained with high-performance 3D CNN models, and have the potential to serve as a point of reference in clinical practice.

Indexed as

Kidney NeoplasmsPhysiciansAdultHumansImage Processing, Computer-AssistedKidneyNeural Networks, Computer2.5D modelKidney tumor segmentationKiTS19KiTS21Medical image segmentationMFFAU-Net

Identifiers

PMID37165349
PMCPMC10173575
OpenAlexW4376131985

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.