Evidence map›Paper›PMID 37165301›Full record

ArticleThe Journal of infectious diseases2023

BK Polyomavirus Diversity After Hematopoietic Stem Cell Transplantation.

Elizabeth A Odegard, Heidi L Meeds, Steven B Kleiboeker, Assem Ziady, Anthony Sabulski, Sonata Jodele, Alix E Seif, Stella M Davies, Benjamin L Laskin, Jason T Blackard

Open access · greenAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
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  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Elizabeth A OdegardDivision of Digestive Diseases, University of Cincinnati College of Medicine, Ohio.ORCID 0000-0003-1074-9747
Heidi L MeedsDivision of Digestive Diseases, University of Cincinnati College of Medicine, Ohio.
Steven B KleiboekerEurofins Viracor Laboratories, Lenexa, Kansas.
Assem ZiadyDepartment of Pediatrics, University of Cincinnati College of Medicine, Ohio.
Anthony SabulskiDepartment of Pediatrics, University of Cincinnati College of Medicine, Ohio.
Sonata JodeleDepartment of Pediatrics, University of Cincinnati College of Medicine, Ohio.
Alix E SeifPerelman School of Medicine, University of Pennsylvania, Pennsylvania.
Stella M DaviesDepartment of Pediatrics, University of Cincinnati College of Medicine, Ohio.
Benjamin L LaskinPerelman School of Medicine, University of Pennsylvania, Pennsylvania.
Jason T BlackardDivision of Digestive Diseases, University of Cincinnati College of Medicine, Ohio.ORCID 0000-0003-2876-3811
Cincinnati Children's Hospital Medical Center · USUniversity of Cincinnati Medical Center · USChildren's Hospital of Philadelphia · USEurofins (United States) · US

Funding

Viral and host predictors of BK polyomavirus associated hemorrhagic cystitisR01DK125418 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI BLACKARD, JASON T, LASKIN, BENJAMIN LEWIS · 2020 to 2024
$3.4M
Initiators of thrombotic microangiopathyR01HL171046 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI JASON T BLACKARD, Sonata Jodele · 2024 to 2026
$2.0M
NHLBI NIH HHS R01 HL171046NIDDK NIH HHS R01 DK125418
6 · The paper itself

Abstract

BK polyomavirus (BKPyV) infection is common after hematopoietic stem cell transplantation (HSCT) and is associated with the development of hemorrhagic cystitis (HC). The role that BKPyV plays in the pathogenesis of HC is not well characterized. We investigated the impact of BKPyV diversity on the development of HC using a previously established cohort of pediatric HSCT patients. There were 147 urine samples with quantifiable BKPyV at month 1 after HSCT; 137 (93.2%) were amplified using our in-house polymerase chain reaction approach and sent for next-generation sequencing. Subtype Ia was most frequent (61.3%), followed by subtype Ib1 (31.4%). The median viral load of subtype Ia samples was higher than for subtype Ib1 at month 1. Across the protein coding regions, APOBEC-induced mutations and signature patterns associated with HC were identified. This is the largest sequencing study of a single cohort of HSCT patients, providing a vast resource of sequence data for future analyses.

Indexed as

BK VirusCystitisHematopoietic Stem Cell TransplantationPolyomavirus InfectionsTumor Virus InfectionsChildHemorrhageHumansBK polyomavirusgenotypehematopoietic stem cell transplantationsubtypeviral diversity

Identifiers

PMID37165301
PMCPMC10629712
OpenAlexW4367055807

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.