Evidence map›Paper›PMID 37163541›Full record

ArticlePLoS genetics2023

PHYTOCHROME C regulation of photoperiodic flowering via PHOTOPERIOD1 is mediated by EARLY FLOWERING 3 in Brachypodium distachyon.

Daniel P Woods, Weiya Li, Richard Sibout, Mingqin Shao, Debbie Laudencia-Chingcuanco, John P Vogel, Jorge Dubcovsky, Richard M Amasino

Expression of concernOpen access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It carries an expression of concern. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
7.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
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  3. The FKF1-ELF3-PRC2 module regulates flowering time in response to light in temperate grasses.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  12. Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 2 countries.

Daniel P WoodsDept. Plant Sciences, University of California, Davis, California, United States of America.ORCID 0000-0002-1498-5707
Weiya LiDepartment of Biochemistry, University of Wisconsin, Madison, Wisconsin, United States of America.ORCID 0000-0002-6106-8530
Richard SiboutInstitut Jean-Pierre Bourgin, UMR1318 INRAE-AgroParisTech, Versailles Cedex, France.
Mingqin ShaoDOE Joint Genome Institute, Berkeley, California, United States of America.
Debbie Laudencia-ChingcuancoUSDA-Agricultural Research Service, Western Regional Research Center, Albany, California, United States of America.
John P VogelDOE Joint Genome Institute, Berkeley, California, United States of America.
Jorge DubcovskyDept. Plant Sciences, University of California, Davis, California, United States of America.
Richard M AmasinoDepartment of Biochemistry, University of Wisconsin, Madison, Wisconsin, United States of America.
Howard Hughes Medical Institute · USJoint Genome Institute · USAgricultural Research Service · USAgroParisTech · FRUnited States Department of Energy · USUniversity of Wisconsin–Madison · US

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007133 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI PERNA, NICOLE T · 1985 to 2023
$16.5M
NIGMS NIH HHS T32 GM007133
6 · The paper itself

Abstract

Daylength sensing in many plants is critical for coordinating the timing of flowering with the appropriate season. Temperate climate-adapted grasses such as Brachypodium distachyon flower during the spring when days are becoming longer. The photoreceptor PHYTOCHROME C is essential for long-day (LD) flowering in B. distachyon. PHYC is required for the LD activation of a suite of genes in the photoperiod pathway including PHOTOPERIOD1 (PPD1) that, in turn, result in the activation of FLOWERING LOCUS T (FT1)/FLORIGEN, which causes flowering. Thus, B. distachyon phyC mutants are extremely delayed in flowering. Here we show that PHYC-mediated activation of PPD1 occurs via EARLY FLOWERING 3 (ELF3), a component of the evening complex in the circadian clock. The extreme delay of flowering of the phyC mutant disappears when combined with an elf3 loss-of-function mutation. Moreover, the dampened PPD1 expression in phyC mutant plants is elevated in phyC/elf3 mutant plants consistent with the rapid flowering of the double mutant. We show that loss of PPD1 function also results in reduced FT1 expression and extremely delayed flowering consistent with results from wheat and barley. Additionally, elf3 mutant plants have elevated expression levels of PPD1, and we show that overexpression of ELF3 results in delayed flowering associated with a reduction of PPD1 and FT1 expression, indicating that ELF3 represses PPD1 transcription consistent with previous studies showing that ELF3 binds to the PPD1 promoter. Indeed, PPD1 is the main target of ELF3-mediated flowering as elf3/ppd1 double mutant plants are delayed flowering. Our results indicate that ELF3 operates downstream from PHYC and acts as a repressor of PPD1 in the photoperiod flowering pathway of B. distachyon.

Indexed as

BrachypodiumPhytochromePlant ProteinsTranscription FactorsEpistasis, GeneticFlowersGene Expression ProfilingMutationPhotoperiodPhytochromePlant ProteinsTranscription Factors

Identifiers

PMID37163541
PMCPMC10171608
OpenAlexW4376133774

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.