Evidence map›Paper›PMID 37163043›Full record

ArticlebioRxiv : the preprint server for biology2023

A spatially resolved single cell genomic atlas of the adult human breast.

Tapsi Kumar, Kevin Nee, Runmin Wei, Siyuan He, Quy H Nguyen, Shanshan Bai, Kerrigan Blake, Yanwen Gong, Maren Pein, Emi Sei and 27 more

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 25 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

37 authors at 4 institutions in 1 country.

Tapsi Kumar
Kevin Nee
Runmin Wei
Siyuan He
Quy H Nguyen
Shanshan Bai
Kerrigan Blake
Yanwen Gong
Maren Pein
Emi Sei
Min Hu
Anna Casasent
Aatish Thennavan
Jianzhuo Li
Tuan Tran
Ken Chen
Benedikt Nilges
Nachiket Kashikar
Oliver Braubach
Bassem Ben Cheikh
Nadya Nikulina
Hui Chen
Mediget Teshome
Brian Menegaz
Huma Javaid
Chandandeep Nagi
Jessica Montalvan
Delia F Tifrea
Robert Edwards
Erin Lin
Ritesh Parajuli
Sebastian Winocour
Alastair Thompson
Bora Lim
Devon A Lawson
Kai Kessenbrock
Nicholas Navin
The University of Texas MD Anderson Cancer Center · USUniversity of California, Irvine · USBaylor College of Medicine · USAkoya Biosciences (United States) · US

Funding

Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Melanie Funes · 1994 to 2026
$57.9M
NCI NIH HHS P30 CA062203
6 · The paper itself

Abstract

The adult human breast comprises an intricate network of epithelial ducts and lobules that are embedded in connective and adipose tissue. While previous studies have mainly focused on the breast epithelial system, many of the non-epithelial cell types remain understudied. Here, we constructed a comprehensive Human Breast Cell Atlas (HBCA) at single-cell and spatial resolution. Our single-cell transcriptomics data profiled 535,941 cells from 62 women, and 120,024 nuclei from 20 women, identifying 11 major cell types and 53 cell states. These data revealed abundant pericyte, endothelial and immune cell populations, and highly diverse luminal epithelial cell states. Our spatial mapping using three technologies revealed an unexpectedly rich ecosystem of tissue-resident immune cells in the ducts and lobules, as well as distinct molecular differences between ductal and lobular regions. Collectively, these data provide an unprecedented reference of adult normal breast tissue for studying mammary biology and disease states such as breast cancer.

Identifiers

PMID37163043
PMCPMC10168262
OpenAlexW4366815990

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.