Evidence map›Paper›PMID 37158601›Full record

ArticleeLife2023

Transcriptional regulation of Sis1 promotes fitness but not feedback in the heat shock response.

Rania Garde, Abhyudai Singh, Asif Ali, David Pincus

Open access · goldAbstract read
In one paragraph

Article in eLife, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. The Heat Shock Response as a Condensate Cascade.Journal of molecular biology · 2024
    Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Rania GardeDepartment of Molecular Genetics and Cell Biology, University of Chicago, Chicago, United States.
Abhyudai SinghDepartment of Electrical and Computer Engineering, University of Delaware, Newark, United States.ORCID 0000-0002-1451-2838
Asif AliDepartment of Molecular Genetics and Cell Biology, University of Chicago, Chicago, United States.
David PincusDepartment of Molecular Genetics and Cell Biology, University of Chicago, Chicago, United States.ORCID 0000-0002-9651-6858
University of Chicago · USUniversity of Delaware · US

Funding

Generalized fluctuation test for deciphering phenotypic switching within cell populationsR35GM148351 · NIGMS · UNIVERSITY OF DELAWARE · PI Abhyudai Singh · 2023 to 2026
$1.6M
Regulatory Dynamics of the Proteostasis NetworkR01GM138689 · NIGMS · UNIVERSITY OF CHICAGO · PI PINCUS, DAVID · 2021 to 2024
$1.3M
Consequences and Control of Randomness in Timing of Intracellular EventsR01GM124446 · NIGMS · UNIVERSITY OF DELAWARE · PI SINGH, ABHYUDAI · 2017 to 2020
$914k
NIGMS NIH HHS R01 GM124446NIGMS NIH HHS R01 GM138689NIGMS NIH HHS R35 GM148351
6 · The paper itself

Abstract

The heat shock response (HSR) controls expression of molecular chaperones to maintain protein homeostasis. Previously, we proposed a feedback loop model of the HSR in which heat-denatured proteins sequester the chaperone Hsp70 to activate the HSR, and subsequent induction of Hsp70 deactivates the HSR (Krakowiak et al., 2018; Zheng et al., 2016). However, recent work has implicated newly synthesized proteins (NSPs) - rather than unfolded mature proteins - and the Hsp70 co-chaperone Sis1 in HSR regulation, yet their contributions to HSR dynamics have not been determined. Here, we generate a new mathematical model that incorporates NSPs and Sis1 into the HSR activation mechanism, and we perform genetic decoupling and pulse-labeling experiments to demonstrate that Sis1 induction is dispensable for HSR deactivation. Rather than providing negative feedback to the HSR, transcriptional regulation of Sis1 by Hsf1 promotes fitness by coordinating stress granules and carbon metabolism. These results support an overall model in which NSPs signal the HSR by sequestering Sis1 and Hsp70, while induction of Hsp70 - but not Sis1 - attenuates the response.

Indexed as

Heat-Shock ResponseSaccharomyces cerevisiae ProteinsHeat Shock Transcription FactorsHSP40 Heat-Shock ProteinsHSP70 Heat-Shock ProteinsMolecular ChaperonesProtein BindingSaccharomyces cerevisiaeHeat Shock Transcription FactorsHSP40 Heat-Shock ProteinsHSP70 Heat-Shock ProteinsMolecular ChaperonesSaccharomyces cerevisiae ProteinsSIS1 protein, S cerevisiaecell biologycomputational biologyfeedbackfitnessheat shockHsf1Hsp70S. cerevisiaeSis1systems biology

Identifiers

PMID37158601
PMCPMC10191621
OpenAlexW4375955613

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.