Evidence map›Paper›PMID 37158599›Full record

ArticleeLife2023

Mouse B2 SINE elements function as IFN-inducible enhancers.

Isabella Horton, Conor J Kelly, Adam Dziulko, David M Simpson, Edward B Chuong

Open access · goldAbstract read
In one paragraph

Article in eLife, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
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  9. PervasivebioRxiv : the preprint server for biology · 2025
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  14. Review
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  19. Interferon-Science (New York, N.Y.) · 2024
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Isabella Horton *Department of Molecular, Cellular, and Developmental Biology and BioFrontiers Institute, University of Colorado Boulder, Boulder, United States.
Conor J Kelly *Department of Molecular, Cellular, and Developmental Biology and BioFrontiers Institute, University of Colorado Boulder, Boulder, United States.ORCID 0000-0003-2410-7892
Adam DziulkoDepartment of Molecular, Cellular, and Developmental Biology and BioFrontiers Institute, University of Colorado Boulder, Boulder, United States.
David M SimpsonDepartment of Molecular, Cellular, and Developmental Biology and BioFrontiers Institute, University of Colorado Boulder, Boulder, United States.
Edward B ChuongDepartment of Molecular, Cellular, and Developmental Biology and BioFrontiers Institute, University of Colorado Boulder, Boulder, United States.ORCID 0000-0002-5392-937X
University of Colorado Boulder · US

Funding

Transposon-mediated rewiring of gene regulatory networksR35GM128822 · NIGMS · UNIVERSITY OF COLORADO · PI Edward Bo-yi Chuong · 2018 to 2026
$3.5M
NIGMS NIH HHS R35 GM128822
6 · The paper itself

Abstract

Regulatory networks underlying innate immunity continually face selective pressures to adapt to new and evolving pathogens. Transposable elements (TEs) can affect immune gene expression as a source of inducible regulatory elements, but the significance of these elements in facilitating evolutionary diversification of innate immunity remains largely unexplored. Here, we investigated the mouse epigenomic response to type II interferon (IFN) signaling and discovered that elements from a subfamily of B2 SINE (B2_Mm2) contain STAT1 binding sites and function as IFN-inducible enhancers. CRISPR deletion experiments in mouse cells demonstrated that a B2_Mm2 element has been co-opted as an enhancer driving IFN-inducible expression of

Indexed as

Interferon-gammaRegulatory Sequences, Nucleic AcidAnimalsBinding SitesBiological EvolutionDNA Transposable ElementsEnhancer Elements, GeneticMicePromoter Regions, GeneticDNA Transposable ElementsInterferon-gammachromosomesgene expressiongene regulationgeneticsgenomicsinterferonmousetransposon

Identifiers

PMID37158599
PMCPMC10229128
OpenAlexW4375955596

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.