Evidence map›Paper›PMID 37158230›Full record

ArticleNucleic acids research2023

DksA is a conserved master regulator of stress response in Acinetobacter baumannii.

Ram P Maharjan, Geraldine J Sullivan, Felise G Adams, Bhumika S Shah, Jane Hawkey, Natasha Delgado, Lucie Semenec, Hue Dinh, Liping Li, Francesca L Short and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Spontaneous Emergence of Cefiderocol Resistance inAntibiotics (Basel, Switzerland) · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Arginine utilization inInfection and immunity · 2025
    Article
  12. Review
  13. Article
  14. Physiological Roles of anbioRxiv : the preprint server for biology · 2024
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 3 countries.

Ram P MaharjanARC Centre of Excellence in Synthetic Biology, School of Natural Sciences, Macquarie University, Sydney, NSW2109, Australia.ORCID 0000-0002-1514-6681
Geraldine J SullivanARC Centre of Excellence in Synthetic Biology, School of Natural Sciences, Macquarie University, Sydney, NSW2109, Australia.ORCID 0000-0001-5253-8660
Felise G AdamsCollege of Science and Engineering, Flinders University, Bedford Park, SA 5042, Australia.ORCID 0000-0002-6427-0689
Bhumika S ShahARC Centre of Excellence in Synthetic Biology, School of Natural Sciences, Macquarie University, Sydney, NSW2109, Australia.ORCID 0000-0001-8968-440X
Jane HawkeyDepartment of Infectious Diseases, Central Clinical School, Monash University, Victoria, Australia.ORCID 0000-0001-9661-5293
Natasha DelgadoARC Centre of Excellence in Synthetic Biology, School of Natural Sciences, Macquarie University, Sydney, NSW2109, Australia.
Lucie SemenecARC Centre of Excellence in Synthetic Biology, School of Natural Sciences, Macquarie University, Sydney, NSW2109, Australia.ORCID 0000-0002-1021-7751
Hue DinhARC Centre of Excellence in Synthetic Biology, School of Natural Sciences, Macquarie University, Sydney, NSW2109, Australia.ORCID 0000-0003-3455-3394
Liping LiARC Centre of Excellence in Synthetic Biology, School of Natural Sciences, Macquarie University, Sydney, NSW2109, Australia.ORCID 0000-0002-2994-6583
Francesca L ShortDepartment of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC3800, Australia.ORCID 0000-0002-0025-4858
Julian ParkhillDepartment of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge CB3 0ES, UK.ORCID 0000-0002-7069-5958
Ian T PaulsenARC Centre of Excellence in Synthetic Biology, School of Natural Sciences, Macquarie University, Sydney, NSW2109, Australia.ORCID 0000-0001-9015-9418
Lars BarquistHelmholtz Institute for RNA-based Infection Research (HIRI), Helmholtz Centre for Infection Research (HZI), 97080Würzburg, Germany.ORCID 0000-0003-4732-2667
Bart A EijkelkampCollege of Science and Engineering, Flinders University, Bedford Park, SA 5042, Australia.ORCID 0000-0003-0179-8977
Amy K CainARC Centre of Excellence in Synthetic Biology, School of Natural Sciences, Macquarie University, Sydney, NSW2109, Australia.ORCID 0000-0002-4230-6572
ARC Centre of Excellence in Synthetic Biology · AUFlinders University · AUAustralian Regenerative Medicine Institute · AUMonash University · AUUniversity of Cambridge · GBUniversity of Würzburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Coordination of bacterial stress response mechanisms is critical for long-term survival in harsh environments for successful host infection. The general and specific stress responses of well-studied Gram-negative pathogens like Escherichia coli are controlled by alternative sigma factors, archetypically RpoS. The deadly hospital pathogen Acinetobacter baumannii is notoriously resistant to environmental stresses, yet it lacks RpoS, and the molecular mechanisms driving this incredible stress tolerance remain poorly defined. Here, using functional genomics, we identified the transcriptional regulator DksA as a master regulator for broad stress protection and virulence in A. baumannii. Transcriptomics, phenomics and in vivo animal studies revealed that DksA controls ribosomal protein expression, metabolism, mutation rates, desiccation, antibiotic resistance, and host colonization in a niche-specific manner. Phylogenetically, DksA was highly conserved and well-distributed across Gammaproteobacteria, with 96.6% containing DksA, spanning 88 families. This study lays the groundwork for understanding DksA as a major regulator of general stress response and virulence in this important pathogen.

Indexed as

Acinetobacter baumanniiEscherichia coli ProteinsAnimalsBacterial ProteinsEscherichia coliGene Expression Regulation, BacterialSigma FactorBacterial ProteinsEscherichia coli ProteinsSigma Factor

Identifiers

PMID37158230
PMCPMC10325922
OpenAlexW4375955862

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.