Evidence map›Paper›PMID 37156909›Full record

ArticleNature cell biology2023

An mRNA processing pathway suppresses metastasis by governing translational control from the nucleus.

Albertas Navickas, Hosseinali Asgharian, Juliane Winkler, Lisa Fish, Kristle Garcia, Daniel Markett, Martin Dodel, Bruce Culbertson, Sohit Miglani, Tanvi Joshi and 8 more

Open access · hybridAbstract read
In one paragraph

Article in Nature cell biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
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  3. Macrophage PABPC4-SPP1 Axis Orchestrates Immunosuppression in Colorectal Cancer.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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  5. APOE4 disrupts the central dogma by arresting neuronal proteome dynamics.bioRxiv : the preprint server for biology · 2026
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 3 countries.

Albertas Navickas *Department of Biochemistry and Biophysics, University of California, San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-0016-2643
Hosseinali Asgharian *Department of Biochemistry and Biophysics, University of California, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-7085-5045
Juliane WinklerDepartment of Cell and Tissue Biology, University of California, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-9762-1721
Lisa FishDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA, USA.
Kristle GarciaDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-9868-8397
Daniel MarkettDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-0752-6681
Martin DodelCentre for Cancer Cell and Molecular Biology, Barts Cancer Institute, Queen Mary University of London, London, UK.
Bruce CulbertsonDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-1489-1348
Sohit MiglaniDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-8075-320X
Tanvi JoshiDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA, USA.ORCID http://orcid.org/0009-0001-5051-7927
Keyi YinDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA, USA.
Phi NguyenDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA, USA.
Steven ZhangDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA, USA.
Nicholas SteversDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-1082-6423
Hun-Way HwangDepartment of Pathology, University of Pittsburgh, Pittsburgh, PA, USA.ORCID http://orcid.org/0000-0003-0522-1577
Faraz MardakhehCentre for Cancer Cell and Molecular Biology, Barts Cancer Institute, Queen Mary University of London, London, UK.ORCID http://orcid.org/0000-0003-3896-0827
Andrei GogaHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-9127-0986
Hani GoodarziDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA, USA. hani.goodarzi@ucsf.edu.ORCID http://orcid.org/0000-0002-9648-8949
University of California, San Francisco · USQueen Mary University of London · GBCentre National de la Recherche Scientifique · FRUniversity of Pittsburgh · US

Funding

Translational InformaticsP30CA082103 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Kate Taylor Shumate · 1999 to 2026
$209.7M
Molecular and Cellular Mechanisms in CancerT32CA108462 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GOGA, ANDREI · 2004 to 2024
$10.4M
Integrative approach to heterogeneity in breast cancer metastasisU01CA199315 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GOGA, ANDREI, SPELLMAN, PAUL T. · 2016 to 2020
$3.2M
An antisense RNA-mediated regulatory program that drives cancer metastasisR01CA240984 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GOODARZI, HANI · 2019 to 2023
$2.5M
Systematic dissection of an aberrant splicing program driving cancer metastasisR00CA194077 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GOODARZI, HANI · 2016 to 2018
$746k
LTQ XL Linear Quadrupole Ion Trap Mass SpectrometerS10RR025622 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI KOHLSTAEDT, LORI · 2009 to 2009
$463k
Developing Ribolog: A toolbox for comprehensive analysis of ribosome profiling dataF32GM133118 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ASGHARIAN, HOSSEINALI · 2019 to 2020
$97k
Howard Hughes Medical InstituteMedical Research Council MR/P009417/1NCI NIH HHS R01 CA240984NCI NIH HHS T32 CA108462NIH HHS F32GM133118NIH HHS P30CA082103NIH HHS R00CA194077NIH HHS S10RR025622NIH HHS T32CA108462-15NIH HHS U01CA199315
6 · The paper itself

Abstract

Cancer cells often co-opt post-transcriptional regulatory mechanisms to achieve pathologic expression of gene networks that drive metastasis. Translational control is a major regulatory hub in oncogenesis; however, its effects on cancer progression remain poorly understood. Here, to address this, we used ribosome profiling to compare genome-wide translation efficiencies of poorly and highly metastatic breast cancer cells and patient-derived xenografts. We developed dedicated regression-based methods to analyse ribosome profiling and alternative polyadenylation data, and identified heterogeneous nuclear ribonucleoprotein C (HNRNPC) as a translational controller of a specific mRNA regulon. We found that HNRNPC is downregulated in highly metastatic cells, which causes HNRNPC-bound mRNAs to undergo 3' untranslated region lengthening and, subsequently, translational repression. We showed that modulating HNRNPC expression impacts the metastatic capacity of breast cancer cells in xenograft mouse models. In addition, the reduced expression of HNRNPC and its regulon is associated with the worse prognosis in breast cancer patient cohorts.

Indexed as

Breast NeoplasmsRNA Processing, Post-TranscriptionalAnimalsFemaleHumansMiceRNA, MessengerRNA, Messenger

Identifiers

PMID37156909
PMCPMC10264242
OpenAlexW4375858932

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.