Evidence map›Paper›PMID 37156904›Full record

ArticleCommunications biology2023

OAF is a DAF-like gene that controls ovule development in plants.

Ya-Chun Li, Jhe-Yi Lin, Wei-Han Hsu, Chen-Ting Kung, Shu-Yu Dai, Jun-Yi Yang, Choon-Meng Tan, Chang-Hsien Yang

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Ya-Chun Li *Institute of Biotechnology, National Chung Hsing University, Taichung, 40227, Taiwan, ROC.
Jhe-Yi Lin *Institute of Biotechnology, National Chung Hsing University, Taichung, 40227, Taiwan, ROC.
Wei-Han Hsu *Institute of Biotechnology, National Chung Hsing University, Taichung, 40227, Taiwan, ROC.
Chen-Ting KungInstitute of Biotechnology, National Chung Hsing University, Taichung, 40227, Taiwan, ROC.
Shu-Yu DaiInstitute of Biotechnology, National Chung Hsing University, Taichung, 40227, Taiwan, ROC.
Jun-Yi YangAdvanced Plant and Food Crop Biotechnology Center, National Chung Hsing University, Taichung, 40227, Taiwan, ROC.
Choon-Meng TanInstitute of Biochemistry, National Chung Hsing University, Taichung, 40227, Taiwan, ROC.
Chang-Hsien YangInstitute of Biotechnology, National Chung Hsing University, Taichung, 40227, Taiwan, ROC. chyang@dragon.nchu.edu.tw.ORCID 0000-0002-2793-0262
National Chung Hsing University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We previously found that the RING-type E3 ligase DEFECTIVE IN ANTHER DEHISCENCE1- (DAD1-) Activating Factor (DAF) controls anther dehiscence by activating the jasmonate biosynthetic pathway in Arabidopsis. Here, we show that in Arabidopsis, the DAF ancestor was duplicated into three genes (DAF, Ovule Activating Factor (OAF), DAFL2), which evolved divergent partial functions from their ancestor through subfunctionalization. In this case, DAF-DAD1-JA signaling regulates anther dehiscence, whereas OAF controls ovule development by negatively regulating cinnamyl alcohol dehydrogenase 9 (CAD9) activity and being negatively regulated by miR847 itself in Arabidopsis. Downregulation of OAF or upregulation of CAD9 and miR847 caused similar abortion of ovule formation due to precocious ovule lignification in transgenic Arabidopsis. Interestingly, only one DAF-like gene, PaOAF, exists in the monocot orchids, which has likely evolved through nonfunctionalization and maintains a conserved function as Arabidopsis OAF in regulating ovule development since defective ovules were observed in the virus-induced gene silencing (VIGS) PaOAF Phalaenopsis orchids. The absence of the DAF ortholog and its function in orchids is likely due to the evolution of stamens to a unique pollinium structure that lacks the feature of anther dehiscence. These findings expand the current knowledge underlying the multifunctional evolution and diverse functionalization of duplicate gene pairs within/among plants.

Indexed as

ArabidopsisArabidopsis ProteinsOvulePlants, Genetically ModifiedUp-RegulationArabidopsis Proteins

Identifiers

PMID37156904
PMCPMC10167350
OpenAlexW4375853239

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.