Evidence map›Paper›PMID 37156858›Full record

ArticleNature plants2023

Structure of the actively translating plant 80S ribosome at 2.2 Å resolution.

Julia Smirnova, Justus Loerke, Gunnar Kleinau, Andrea Schmidt, Jörg Bürger, Etienne H Meyer, Thorsten Mielke, Patrick Scheerer, Ralph Bock, Christian M T Spahn and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Nature plants, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Julia SmirnovaInstitute of Medical Physics and Biophysics, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany. julia.smirnova@charite.de.ORCID http://orcid.org/0000-0003-4583-3447
Justus LoerkeInstitute of Medical Physics and Biophysics, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany.ORCID http://orcid.org/0000-0002-3424-8536
Gunnar KleinauInstitute of Medical Physics and Biophysics, Group Protein X-ray Crystallography and Signal Transduction, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany.ORCID http://orcid.org/0000-0003-2131-671X
Andrea SchmidtInstitute of Medical Physics and Biophysics, Group Protein X-ray Crystallography and Signal Transduction, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany.ORCID http://orcid.org/0000-0003-1985-1908
Jörg BürgerInstitute of Medical Physics and Biophysics, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany.
Etienne H MeyerDepartment III, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.ORCID http://orcid.org/0000-0003-4712-9824
Thorsten MielkeMicroscopy and Cryo-Electron Microscopy Service Group, Max Planck Institute for Molecular Genetics, Berlin, Germany.ORCID http://orcid.org/0000-0001-9275-3146
Patrick ScheererInstitute of Medical Physics and Biophysics, Group Protein X-ray Crystallography and Signal Transduction, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany.ORCID http://orcid.org/0000-0001-5028-2075
Ralph BockDepartment III, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany. rbock@mpimp-golm.mpg.de.ORCID http://orcid.org/0000-0001-7502-6940
Christian M T SpahnInstitute of Medical Physics and Biophysics, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany. christian.spahn@charite.de.ORCID http://orcid.org/0000-0002-2939-9487
Reimo ZoschkeDepartment III, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany. zoschke@mpimp-golm.mpg.de.ORCID http://orcid.org/0000-0002-6898-6836
Humboldt-Universität zu Berlin · DEMax Planck Institute of Molecular Plant Physiology · DEMax Planck Institute for Molecular Genetics · DE

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) 221545957Deutsche Forschungsgemeinschaft (German Research Foundation) 394046635Deutsche Forschungsgemeinschaft (German Research Foundation) 416210002Deutsche Forschungsgemeinschaft (German Research Foundation) 421152132Deutsche Forschungsgemeinschaft (German Research Foundation) SFB-TRR 175 (A4)Deutsche Forschungsgemeinschaft (German Research Foundation) ZO 302/5-1EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 956314
6 · The paper itself

Abstract

In plant cells, translation occurs in three compartments: the cytosol, the plastids and the mitochondria. While the structures of the (prokaryotic-type) ribosomes in plastids and mitochondria are well characterized, high-resolution structures of the eukaryotic 80S ribosomes in the cytosol have been lacking. Here the structure of translating tobacco (Nicotiana tabacum) 80S ribosomes was solved by cryo-electron microscopy with a global resolution of 2.2 Å. The ribosome structure includes two tRNAs, decoded mRNA and the nascent peptide chain, thus providing insights into the molecular underpinnings of the cytosolic translation process in plants. The map displays conserved and plant-specific rRNA modifications and the positions of numerous ionic cofactors, and it uncovers the role of monovalent ions in the decoding centre. The model of the plant 80S ribosome enables broad phylogenetic comparisons that reveal commonalities and differences in the ribosomes of plants and those of other eukaryotes, thus putting our knowledge about eukaryotic translation on a firmer footing.

Indexed as

RibosomesRNA, RibosomalCryoelectron MicroscopyCytosolModels, MolecularNicotianaPhylogenyPlantsRNA, Ribosomal

Identifiers

PMID37156858
PMCPMC10281867
OpenAlexW4375859037

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.