Evidence map›Paper›PMID 37156762›Full record

ArticleScientific data2023

VISEM-Tracking, a human spermatozoa tracking dataset.

Vajira Thambawita, Steven A Hicks, Andrea M Storås, Thu Nguyen, Jorunn M Andersen, Oliwia Witczak, Trine B Haugen, Hugo L Hammer, Pål Halvorsen, Michael A Riegler

Open access · goldAbstract readDataset
In one paragraph

Article in Scientific data, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
12.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 45 citations in OpenAlex.

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  12. [Application of Artificial Intelligence in Sperm Quality Analysis and Sperm Screening].Sichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Vajira Thambawita *Simula Metropolitan Center for Digital Engineering, Oslo, Norway. vajira@simula.no.ORCID 0000-0001-6026-0929
Steven A Hicks *Simula Metropolitan Center for Digital Engineering, Oslo, Norway.
Andrea M Storås *Simula Metropolitan Center for Digital Engineering, Oslo, Norway.
Thu NguyenSimula Metropolitan Center for Digital Engineering, Oslo, Norway.
Jorunn M AndersenOslo Metropolitan University, Oslo, Norway.
Oliwia WitczakOslo Metropolitan University, Oslo, Norway.
Trine B HaugenOslo Metropolitan University, Oslo, Norway.
Hugo L Hammer *Simula Metropolitan Center for Digital Engineering, Oslo, Norway.
Pål HalvorsenSimula Metropolitan Center for Digital Engineering, Oslo, Norway.ORCID 0000-0003-2073-7029
Michael A Riegler *Simula Metropolitan Center for Digital Engineering, Oslo, Norway.ORCID 0000-0002-3153-2064
OsloMet – Oslo Metropolitan University · NOSimula Metropolitan Center for Digital Engineering · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A manual assessment of sperm motility requires microscopy observation, which is challenging due to the fast-moving spermatozoa in the field of view. To obtain correct results, manual evaluation requires extensive training. Therefore, computer-aided sperm analysis (CASA) has become increasingly used in clinics. Despite this, more data is needed to train supervised machine learning approaches in order to improve accuracy and reliability in the assessment of sperm motility and kinematics. In this regard, we provide a dataset called VISEM-Tracking with 20 video recordings of 30 seconds (comprising 29,196 frames) of wet semen preparations with manually annotated bounding-box coordinates and a set of sperm characteristics analyzed by experts in the domain. In addition to the annotated data, we provide unlabeled video clips for easy-to-use access and analysis of the data via methods such as self- or unsupervised learning. As part of this paper, we present baseline sperm detection performances using the YOLOv5 deep learning (DL) model trained on the VISEM-Tracking dataset. As a result, we show that the dataset can be used to train complex DL models to analyze spermatozoa.

Indexed as

SemenSpermatozoaSperm MotilityHumansMaleReproducibility of ResultsVideo Recording

Identifiers

PMID37156762
PMCPMC10167330
OpenAlexW4375850866

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.