Evidence map›Paper›PMID 37156613›Full record

ArticleJournal of clinical pathology2024

High-resolution melting assay for rapid, simultaneous detection of

Christopher M Sande, Guang Yang, Ayman Mohamed, Ben L Legendre, Danielle Pion, Stephanie L Ferro, Kate Grimm, Kojo S J Elenitoba-Johnson

Open access · hybridAbstract read
In one paragraph

Article in Journal of clinical pathology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. The Pyrosequencing-Based Method forDiagnostics (Basel, Switzerland) · 2026
    Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Christopher M SandeDepartment of Pathology and Laboratory Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA.ORCID http://orcid.org/0000-0001-5868-1986
Guang YangDepartment of Pathology and Laboratory Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA.
Ayman MohamedPrecipio Inc, New Haven, Connecticut, USA.
Ben L LegendrePrecipio Inc, New Haven, Connecticut, USA.
Danielle PionPrecipio Inc, New Haven, Connecticut, USA.
Stephanie L FerroPrecipio Inc, New Haven, Connecticut, USA.
Kate GrimmPrecipio Inc, New Haven, Connecticut, USA.
Kojo S J Elenitoba-JohnsonDepartment of Pathology and Laboratory Medicine, Memorial Sloan Kettering Cancer Center, New York, New York, USA elenitk@mskcc.org.
Precipio (United States) · USUniversity of Pennsylvania · USMemorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
NCI NIH HHS P30 CA008748
6 · The paper itself

Abstract

aimsIdentification of recurrent genetic alterations in

methodsThe HemeScreen MPN assay was validated with blood and bone marrow samples from 982 patients with clinical suspicion for MPN. The HRM assay and Sanger sequencing were performed in independent Clinical Laboratory Improvement Amendments (CLIA)-certified laboratories with Sanger sequencing (supported by droplet digital PCR) serving as the gold standard.

resultsHRM and Sanger sequencing had an overall concordance of 99.4% with HRM detecting 133/139 (96%) variants confirmed by sequencing (9/10 MPL, 25/25 CALR, 99/104 JAK2), including 114 single nucleotide variants and 25 indels (3-52 bp). Variants consisted of disease-associated (DA) variants (89%), variants of unclear significance (2%) and non-DA variants (9%) with a positive predictive value of 92.3% and negative predictive value of 99.5%.

conclusionsThese studies demonstrate the exquisite accuracy, sensitivity and specificity of the HRM-based HemeScreen MPN assay, which serves as a powerful, clinically applicable platform for rapid, simultaneous detection of clinically relevant, somatic disease variants.

Indexed as

CalreticulinJanus Kinase 2Myeloproliferative DisordersReceptors, ThrombopoietinDNA Mutational AnalysisExonsHumansMutationPolymerase Chain ReactionPredictive Value of TestsReproducibility of ResultsCalreticulinCALR protein, humanJAK2 protein, humanJanus Kinase 2MPL protein, humanReceptors, Thrombopoietingenes, neoplasmmyeloproliferative disordersneoplasmsoncogenespolycythemia vera

Identifiers

PMID37156613
PMCPMC11867640
OpenAlexW4375865025

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.