Evidence map›Paper›PMID 37155022›Full record

ArticlePlant molecular biology2023

Comparative transcriptome sequencing analysis to postulate the scheme of regulated leaf coloration in Perilla frutescens.

Xiaoning Liu, Yanning Zhai, Jingyu Liu, Jingqi Xue, Tatjana Markovic, Shunli Wang, Xiuxin Zhang

Open access · bronzeAbstract read
In one paragraph

Article in Plant molecular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Xiaoning Liu *Key Laboratory of Biology and Genetic Improvement of Flower Crops (North China)Ministry of Agriculture and Rural Affairs, China, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Yanning Zhai *Key Laboratory of Biology and Genetic Improvement of Flower Crops (North China)Ministry of Agriculture and Rural Affairs, China, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Jingyu Liu *Key Laboratory of Biology and Genetic Improvement of Flower Crops (North China)Ministry of Agriculture and Rural Affairs, China, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Jingqi XueKey Laboratory of Biology and Genetic Improvement of Flower Crops (North China)Ministry of Agriculture and Rural Affairs, China, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Tatjana MarkovicNstitute for Medicinal Plants Research "Dr Josif Pancic", 11000, Belgrade, Serbia.
Shunli WangKey Laboratory of Biology and Genetic Improvement of Flower Crops (North China)Ministry of Agriculture and Rural Affairs, China, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China. wangshunli@caas.cn.
Xiuxin ZhangKey Laboratory of Biology and Genetic Improvement of Flower Crops (North China)Ministry of Agriculture and Rural Affairs, China, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China. zhangxiuxin@caas.cn.ORCID http://orcid.org/0000-0001-8465-7365
Institute of Vegetables and Flowers · CNInstitute for Plant Protection and Environment · RSQingdao Agricultural University · CN

Funding

Agriculture Research System of China CARS-21
6 · The paper itself

Abstract

Perilla as herb, ornamental, oil and edible plant is widely used in East Asia. Until now, the mechanism of regulated leaf coloration is still unclear. In this study, four different kinds of leaf colors were used to measure pigment contents and do transcriptome sequence to postulate the mechanism of leaf coloration. The measurements of chlorophyll, carotenoid, flavonoid, and anthocyanin showed that higher contents of all the aforementioned four pigments were in full purple leaf 'M357', and they may be determined front and back leaf color formation with purple. Meanwhile, the content of anthocyanin was controlled back leaf coloration. The chromatic aberration analysis and correlative analysis between different pigments and L*a*b* values analysis also suggested front and back leaf color change was correlated with the above four pigments. The genes involved in leaf coloration were identified through transcriptome sequence. The expression levels of chlorophyll synthesis and degradation related genes, carotenoid synthesis related genes and anthocyanin synthesis genes showed up-/down-regulated expression in different color leaves and were consistent of accumulation of these pigments. It was suggested that they were the candidate genes regulated perilla leaf color formation, and genes including F3'H, F3H, F3',5'H, DFR, and ANS are probably important for regulating both front and back leaf purple formation. Transcription factors involved in anthocyanin accumulation, and regulating leaf coloration were also identified. Finally, the probable scheme of regulated both full green and full purple leaf coloration and back leaf coloration was postulated.

Indexed as

Perilla frutescensTranscriptomeAnthocyaninsCarotenoidsChlorophyllGene Expression ProfilingGene Expression Regulation, PlantPigmentationPlant LeavesPlant ProteinsAnthocyaninsCarotenoidsChlorophyllPlant ProteinsAnthocyaninCarotenoidChlorophyllLeaf colorPerillaTranscriptome sequencing

Identifiers

PMID37155022
PMCPMC10165580
OpenAlexW4375860575

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.