Evidence map›Paper›PMID 37154828›Full record

ArticleAMB Express2023

An improved integrative GFP-based vector for genetic engineering of Parageobacillus thermoglucosidasius facilitates the identification of a key sporulation regulator.

Marie Millgaard, Gonzalo Nahuel Bidart, Ivan Pogrebnyakov, Alex Toftgaard Nielsen, Ditte Hededam Welner

Open access · goldAbstract read
In one paragraph

Article in AMB Express, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. The engineering toolbox of Parageobacillus thermoglucosidasius.Applied microbiology and biotechnology · 2025
    Review
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 2 countries.

Marie MillgaardThe Novo Nordisk Foundation Center for Biosustainability, Building 220, Kemitorvet, 2800, Kgs. Lyngby, Denmark.
Gonzalo Nahuel BidartThe Novo Nordisk Foundation Center for Biosustainability, Building 220, Kemitorvet, 2800, Kgs. Lyngby, Denmark.
Ivan PogrebnyakovThe Novo Nordisk Foundation Center for Biosustainability, Building 220, Kemitorvet, 2800, Kgs. Lyngby, Denmark.
Alex Toftgaard NielsenThe Novo Nordisk Foundation Center for Biosustainability, Building 220, Kemitorvet, 2800, Kgs. Lyngby, Denmark. atn@biosustain.dtu.dk.ORCID http://orcid.org/0000-0001-6616-0187
Ditte Hededam WelnerThe Novo Nordisk Foundation Center for Biosustainability, Building 220, Kemitorvet, 2800, Kgs. Lyngby, Denmark. diwel@biosustain.dtu.dk.
Novo Nordisk Foundation · DK

Funding

Danmarks Frie Forskningsfond 1032-00448AHorizon 2020 Framework Programme 101037009Novo Nordisk Fonden NNF19OC0055620Novo Nordisk Fonden NNF20CC0035580Villum Fonden 40986
6 · The paper itself

Abstract

Parageobacillus thermoglucosidasius is a thermophilic Gram-positive bacterium, which is a promising host organism for sustainable bio-based production processes. However, to take full advantage of the potential of P. thermoglucosidasius, more efficient tools for genetic engineering are required. The present study describes an improved shuttle vector, which speeds up recombination-based genomic modification by incorporating a thermostable sfGFP variant into the vector backbone. This additional selection marker allows for easier identification of recombinants, thereby removing the need for several culturing steps. The novel GFP-based shuttle is therefore capable of facilitating faster metabolic engineering of P. thermoglucosidasius through genomic deletion, integration, or exchange. To demonstrate the efficiency of the new system, the GFP-based vector was utilised for deletion of the spo0A gene in P. thermoglucosidasius DSM2542. This gene is known to be a key regulator of sporulation in Bacillus subtilis, and it was therefore hypothesised that the deletion of spo0A in P. thermoglucosiadius would produce an analogous sporulation-inhibited phenotype. Subsequent analyses of cell morphology and culture heat resistance suggests that the P. thermoglucosidasius ∆spo0A strain is sporulation-deficient. This strain may be an excellent starting point for future cell factory engineering of P. thermoglucosidasius, as the formation of endospores is normally not a desired trait in large-scale production.

Indexed as

Genetic engineeringParageobacillus thermoglucosidasiusShuttle vectorSporulationThermophile

Identifiers

PMID37154828
PMCPMC10167077
OpenAlexW4375860784

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.