Evidence map›Paper›PMID 37154724›Full record

ArticleMicrobiology spectrum2023

Transmembrane Transcription Regulators Are Widespread in Bacteria and Archaea.

Lucas M Demey, Vadim M Gumerov, Jiawei Xing, Igor B Zhulin, Victor J DiRita

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Lucas M Demey *Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA.ORCID 0000-0003-0491-0549
Vadim M Gumerov *Department of Microbiology and Translational Data Analytics Institute, The Ohio State University, Columbus, Ohio, USA.ORCID 0000-0003-1670-7679
Jiawei XingDepartment of Microbiology and Translational Data Analytics Institute, The Ohio State University, Columbus, Ohio, USA.
Igor B ZhulinDepartment of Microbiology and Translational Data Analytics Institute, The Ohio State University, Columbus, Ohio, USA.ORCID 0000-0002-6708-5323
Victor J DiRitaDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA.ORCID 0000-0003-3617-7011
The Ohio State University · USMichigan State University · US

Funding

Computational Genomics of Signal TransductionR35GM131760 · NIGMS · OHIO STATE UNIVERSITY · PI Igor B. Jouline · 2019 to 2026
$3.2M
Integrative Training in the Pharmacological SciencesT32GM092715 · NIGMS · MICHIGAN STATE UNIVERSITY · PI NEUBIG, RICHARD R · 2011 to 2020
$1.5M
NIGMS NIH HHS R35 GM131760NIGMS NIH HHS T32 GM092715
6 · The paper itself

Abstract

To adapt and proliferate, bacteria must sense and respond to the ever-changing environment. Transmembrane transcription regulators (TTRs) are a family of one-component transcription regulators that respond to extracellular information and influence gene expression from the cytoplasmic membrane. How TTRs function to modulate expression of their target genes while localized to the cytoplasmic membrane remains poorly understood. In part, this is due to a lack of knowledge regarding the prevalence of TTRs among prokaryotes. Here, we show that TTRs are highly diverse and prevalent throughout bacteria and archaea. Our work demonstrates that TTRs are more common than previously appreciated and are enriched within specific bacterial and archaeal phyla and that many TTRs have unique transmembrane region properties that can facilitate association with detergent-resistant membranes.

Indexed as

ArchaeaBacteriaBacterial ProteinsCell MembraneHumansProtein DomainsSignal TransductionBacterial Proteinscell membranessignal transductiontranscription factors

Identifiers

PMID37154724
PMCPMC10269533
OpenAlexW4375859850

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.