Evidence map›Paper›PMID 37151285›Full record

ArticlePeerJ2023

Somatic mutation profiling, tumor-infiltrating leukocytes, tertiary lymphoid structures and PD-L1 protein expression in HER2-amplified colorectal cancer.

Xiao-Ting Liu, Zhi-Yong Kou, Hushan Zhang, Jian Dong, Jian-Hua Zhang, You-Jun Peng, Shu Min Ma, Lei Liang, Xuan-Yu Meng, Yuan Zhou and 1 more

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.9field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Xiao-Ting Liu *Department of Oncology, The First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, China.
Zhi-Yong Kou *Department of Oncology, The First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, China.
Hushan ZhangZhaotong Healthy Vocational College, Zhaotong, Yunnan, China.
Jian DongColorectal Cancer Clinical Research Center, Yunnan Cancer Hospital, Kunming, Yunnan, China.
Jian-Hua ZhangDepartment of General Surgery, The Third People's Hospital of Honghe Prefecture, Honghe, Yunnan, China.
You-Jun PengDepartment of General Surgery, The Third People's Hospital of Honghe Prefecture, Honghe, Yunnan, China.
Shu Min MaDepartment of General Surgery, The Second People's Hospital of Qujing, Qujing, Yunnan, China.
Lei LiangDepartment of General Surgery, The Third People's Hospital of Honghe Prefecture, Honghe, Yunnan, China.
Xuan-Yu MengDepartment of Oncology, The First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, China.
Yuan ZhouDepartment of Oncology, The First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, China.
Jun YangDepartment of Oncology, The First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, China.
First Affiliated Hospital of Kunming Medical University · CNThird People's Hospital of Yunnan Province · CNKunming Medical University · CNXian Yang Central Hospital · CNZhaotong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The status of human epidermal growth factor receptor 2 (HER2) for the prognosis in colorectal cancer (CRC) is controversial, and the characteristics of the somatic mutation spectrum, tumor-infiltrating leukocytes, tertiary lymphoid structures and PD-L1 protein are unknown in HER2-amplified colorectal cancer (HACC). In order to explore these characteristics along with their correlation with clinicopathological factors and prognosis in HACC. Samples of 812 CRC patients was collected. After immunohistochemistry (IHC), 59 of 812 were found to be HER2-positive, then 26 of 59 samples were further determined to be HER2 amplification by fluorescence in situ hybridization (FISH). Somatic mutation profiling of HACC was analysed using whole exome sequencing (WES). Multiplex fluorescence immunohistochemistry (mIHC) was used for tumor-infiltrating leukocytes and tertiary lymphoid structures (TLSs), while PD-L1 protein was detected by IHC. Our results indicate that the detection rates of HER2 positivity by IHC and FISH were 7.3% and 3.2% respectively, and HER2 amplification is correlated with distant tumour metastasis. The somatic mutation profiling revealed no differences between HACC and HER2-negative CRC. However, TP 53 strongly correlated with poor prognosis in HACC. Furthermore, tumor-infiltrating T cells and TLSs in the tumor immune microenvironment, as well as PD-L1 expression, were higher in HACC than in HER2-negative controls. However, none of them were associated with the prognosis of HACC. In all, HER2 amplification is correlated with distant metastasis and TP53 gene mutation may be a potential protective mechanism of HACC.

Indexed as

Colorectal NeoplasmsTertiary Lymphoid StructuresB7-H1 AntigenErb-b2 Receptor Tyrosine KinasesHumansIn Situ Hybridization, FluorescenceMutationTumor MicroenvironmentB7-H1 AntigenERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesColorectal cancerHER2PD-L1 expressionSomatic mutation profilingTumour immune microenvironment

Identifiers

PMID37151285
PMCPMC10162038
OpenAlexW4375855302

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.